PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA46979.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 405aa    MW: 45090.3 Da    PI: 6.5873
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA46979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.91e-90163982374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ Ll cA av+s+d+  a + L +l  ++s +gdp+qR+aayft +Laar++   s  y ++ +++++    ++e+aa+++f+  sP+++f+h+taNq
  PKA46979.1  16 IRRLLLCASAVDSRDFISAAHSLLHLYRNVSVSGDPFQRVAAYFTDGLAARILTANSPFYTSIMAKPSP----ADEFAAFTAFYRDSPYYQFAHFTANQ 110
                 678999************************************************999999999999997....899999******************** PP

        GRAS 101 aIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledlel 191
                 aI ea+e++       +H++Dfd+++GlQWp+L+q+L++ +  e+p sl+iTg+g+     + el+et+ rL+ fA+ + +++fef+     r+++ e 
  PKA46979.1 111 AIIEAFEEAadsngGSLHVVDFDVGYGLQWPSLIQSLSDMAtrENPISLKITGFGR----GSAELRETETRLSGFAAGCrNLRFEFEG----RMKNQEQ 201
                 *******9988888899********************9766657777*********....99*************987548*******....4555544 PP

        GRAS 192 ee.LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 ++ ++v+++ +laVnlv+ lh+l  + ++++    + L+l++ ++P +v++ve+e  +  n++ Fl rf+e l++++a+fdsle  lp+es+er  +Er
  PKA46979.1 202 SMiIKVNQNATLAVNLVFYLHTLK-NYAEIS----SALQLINAMNPSIVTLVEKEGTCrkNQPGFLSRFMEYLHFFAAMFDSLEDCLPAESKERLEIER 295
                 4416999***************97.444444....5*******************65555*************************************** PP

        GRAS 288 ellgreivnvvace....gaerrerhetlekWrerleeaGFkpvplsekaakqaklllr.........kvk.sdgyrveee.sgslv.lgWkdrpLvsv 370
                   lg ei+++v  +    g+    ++e+le+W+e +++ GF+  ++s++ ++qaklll+         +++   g+r+ e+ +g ++ lgW+ r L+++
  PKA46979.1 296 NHLGMEIKEAVLLArggvGEGEGLNCESLERWKEVMRKNGFEGKAMSSRSVSQAKLLLKiknhcsamaEHGsLTGFRISERdEGKAIsLGWQYRHLITA 394
                 *********99654111133345689*******************************9733322222234445679999763556667*********** PP

        GRAS 371 SaWr 374
                 +aWr
  PKA46979.1 395 TAWR 398
                 ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MVLTQEAAGE HGLQLIRRLL LCASAVDSRD FISAAHSLLH LYRNVSVSGD PFQRVAAYFT  60
DGLAARILTA NSPFYTSIMA KPSPADEFAA FTAFYRDSPY YQFAHFTANQ AIIEAFEEAA  120
DSNGGSLHVV DFDVGYGLQW PSLIQSLSDM ATRENPISLK ITGFGRGSAE LRETETRLSG  180
FAAGCRNLRF EFEGRMKNQE QSMIIKVNQN ATLAVNLVFY LHTLKNYAEI SSALQLINAM  240
NPSIVTLVEK EGTCRKNQPG FLSRFMEYLH FFAAMFDSLE DCLPAESKER LEIERNHLGM  300
EIKEAVLLAR GGVGEGEGLN CESLERWKEV MRKNGFEGKA MSSRSVSQAK LLLKIKNHCS  360
AMAEHGSLTG FRISERDEGK AISLGWQYRH LITATAWRPL TALEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.16e-51GRAS family protein