PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46674.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 290aa MW: 32194.6 Da PI: 6.7228

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.8e-11	13	47	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 rg W++eEde+l+++++ +G g+W+++++ g ++ PKA46674.1 13 RGLWSPEEDEKLIKYITTHGLGCWSSVPKLAG-SLS 47 788****************************9.544 PP
2	Myb_DNA-binding	52.1	1.5e-16	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ PKA46674.1 91 RGNFTENEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 134 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGHQCCSKQK VKRGLWSPEE DEKLIKYITT HGLGCWSSVP KLAGSLSLSL SFSLSLSLSL 60 SLSLSALAGL QRCGKSCRLR WINYLRPDLK RGNFTENEER IIIDVHRILG NRWAQIAKHL 120 PGRTDNEVKN FWNSCIKKKL IAQGLDPKTH NLIPNSMPPN IIKPSNLSHF SQPVQPFTIC 180 SSSACSAANI ASSSLIVSSF QLQQDANLNI PDLDQSFNYN HHDPHELIMI DESCSINWAA 240 LGQAHDESIM GEKINDASKV VMNGDHVESS IDGDAAAFEL ELMEGLQWEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	1e-73	MYB family protein