PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46510.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SRS

Protein Properties

Length: 322aa MW: 33559.2 Da PI: 8.9503

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.5	5e-66	96	247	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 +g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa+rrerqqql + s + a ++++kr+r+l ++ ++s++ s PKA46510.1 96 AGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAARRRERQQQLLPSPSGRPPLAppssgGAETTKRPRDL------STRLPTISTTMS 188 5789********************************************9999888777665554544466666666665......445555566666 PP DUF702 97 kkeletsslPeevsseavfrcvrvssv.ddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ss+P+evss+avfrcvrvs v d++ +++aYq+avsigGhvf+GiLydqG+e PKA46510.1 189 GGTQGDSSFPAEVSSPAVFRCVRVSPVvDEASDQFAYQAAVSIGGHVFRGILYDQGPEP 247 66678899*************8626799**********************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MAGFSLSGGH QRQVEEGPDG IHPESFFLYP GGHSGSAASG GARGFELWQQ HQHQIQQRQQ 60 QQQFYSVSSG ALLAFGGSDE PIAPPAGRSG QRGFGAGGVS CQDCGNQAKK DCAHMRCRTC 120 CKSRGFQCST HVKSTWVPAA RRRERQQQLL PSPSGRPPLA PPSSGGAETT KRPRDLSTRL 180 PTISTTMSGG TQGDSSFPAE VSSPAVFRCV RVSPVVDEAS DQFAYQAAVS IGGHVFRGIL 240 YDQGPEPKLS PSSAPRRQVL LIAGESSSGA GAGAGNGASL VTITGSSAAT ASSGLLDPSS 300 LYPTPLNAFM AGSHFFPNQP KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	7e-51	SRS family protein