PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA46380.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 524aa    MW: 58574.4 Da    PI: 7.0325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA46380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.81.7e-1301545232373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL+ecAea+++g  +  ++l+++ +e++s +gdp+qR+ ay++e+L ar  +s++++y+al++++ +  +s+e l++++++++++P++kf++++aN 
  PKA46380.1 154 KHLLTECAEALDEGRIADFESLVKETREHVSINGDPIQRVGAYMLEGLVARHESSGTNIYRALRCRQPP--ESKELLSYMRILYDICPYFKFGYMAANG 250
                 79******************************************************************9..599************************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp +RiTg+++p+s+  + + l+ +g  L+++ +++ +p+ef+ l +    +++ e+L++k
  PKA46380.1 251 AIAEAIRSEDRIHIIDFQIAQGTQWVTLIQALAARPGGPPLVRITGIDDPDSKyaRGTGLQLVGGMLSEMSKKFCIPLEFKGL-SVYGPQVTREMLEIK 348
                 ***************************************************999999*************************5.88899********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkvv+vveqe+++n+++Fl+rf+e+++yysa+f+s++++l+r+s+er+ vE+++l+++ivn
  PKA46380.1 349 PGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVVTVVEQESNTNTAPFLTRFAETFDYYSAMFESIDVTLHRKSRERVGVEQHCLAKDIVN 447
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 v+aceg+er+erhe l+kWr+rl++aGF+p pls+++++ +k+ll  ++++ y++ e++g+++lgW++r+L+s+SaW
  PKA46380.1 448 VIACEGKERIERHELLGKWRSRLTMAGFRPFPLSSYVNSVIKTLLGYYSNK-YTLVEKDGAMLLGWSNRNLISASAW 523
                 **********************************************99966.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    
MDSHKRHRYG FKLTGADHIS YRFPSANPLC SASTAVSLKP DLGNSPISPL SSQFDCESSL  60
PSLTQEQHSS TDTETRANIA EGYAVCSQIS MRHVLQEIES VLMAPDSNEA ASSSRGRKQK  120
NRRKEPESAY HQHQHPENRH GEATGEAFPC VDIKHLLTEC AEALDEGRIA DFESLVKETR  180
EHVSINGDPI QRVGAYMLEG LVARHESSGT NIYRALRCRQ PPESKELLSY MRILYDICPY  240
FKFGYMAANG AIAEAIRSED RIHIIDFQIA QGTQWVTLIQ ALAARPGGPP LVRITGIDDP  300
DSKYARGTGL QLVGGMLSEM SKKFCIPLEF KGLSVYGPQV TREMLEIKPG EALAVNFTLQ  360
LHHTPDESVD VNNPRDGLLR MVKGLSPKVV TVVEQESNTN TAPFLTRFAE TFDYYSAMFE  420
SIDVTLHRKS RERVGVEQHC LAKDIVNVIA CEGKERIERH ELLGKWRSRL TMAGFRPFPL  480
SSYVNSVIKT LLGYYSNKYT LVEKDGAMLL GWSNRNLISA SAWH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RKQKNRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-176GRAS family protein