PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45744.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 520aa MW: 56921.6 Da PI: 6.4632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.2e-13	373	419	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PKA45744.1 373 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 419 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MKTEIWSEDD RAMAVAVLGE QAFQHLTTSF ASSDGLVAVD GGAGDLQNAL IDLVETAGWS 60 FGIIWQISRC GSGDLVLGWG DGHLRDESRS SAVDEAHQKM RKRVLQKLHL FYGGSEDENY 120 ALRLDRVTDA EMFFLASMYF TFRAGEGAPG RVLLEGKHYW AVGLGHRSPA ENSEYCVRAF 180 LARAAGFRTI VLLPLENGVL ELGSVNLIPE NFEALPMIKS IFSGRAPPVS DEKDTKSKIQ 240 HFIDCSMICS EGLTMGKSLS AATKVDEKPH EIRGIINSIA AGNSMALNWK HTLPFSNGVE 300 IRRSHVQQPA AQPSQKIDFA GAASSVAGPI SGLDLEQSDA DASCKEEKPS IIDEQRPRKR 360 GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITELQK 420 KLKEVESSPC DHRKRSPEVE VQTACEEVIV RVSCPLETHP ASHVILAFKE LETAIVESKS 480 SASEDSVLHT FVVRSAAGAE QATKEKLITA ISGKMSSIGR

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MKTEIWSEDD RAMAVAVLGE QAFQHLTTSF ASSDGLVAVD GGAGDLQNAL IDLVETAGWS  60
FGIIWQISRC GSGDLVLGWG DGHLRDESRS SAVDEAHQKM RKRVLQKLHL FYGGSEDENY  120
ALRLDRVTDA EMFFLASMYF TFRAGEGAPG RVLLEGKHYW AVGLGHRSPA ENSEYCVRAF  180
LARAAGFRTI VLLPLENGVL ELGSVNLIPE NFEALPMIKS IFSGRAPPVS DEKDTKSKIQ  240
HFIDCSMICS EGLTMGKSLS AATKVDEKPH EIRGIINSIA AGNSMALNWK HTLPFSNGVE  300
IRRSHVQQPA AQPSQKIDFA GAASSVAGPI SGLDLEQSDA DASCKEEKPS IIDEQRPRKR  360
GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITELQK  420
KLKEVESSPC DHRKRSPEVE VQTACEEVIV RVSCPLETHP ASHVILAFKE LETAIVESKS  480
SASEDSVLHT FVVRSAAGAE QATKEKLITA ISGKMSSIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-128	bHLH family protein