PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA45638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 235aa MW: 26463.9 Da PI: 5.2526 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 152.7 | 6.7e-48 | 80 | 183 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql+ fw++q i +tdfknh+lPlarikki+kadedvkmi+ae+Pvl+s+ace+filelt rsw ++e++krrtl++sdia+a+++ ++fdflvdiv PKA45638.1 80 QLHFFWTSQlqeIRANTDFKNHNLPLARIKKIMKADEDVKMIAAETPVLFSRACEMFILELTHRSWGQTEHSKRRTLQRSDIASAIAKNQVFDFLVDIV 178 7999***997777889*********************************************************************************** PP NF-YC 97 prdel 101 p +e+ PKA45638.1 179 PVEET 183 *9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence |
MEIGEQGQGN VDEAAQPQQP IMDPAQFPLI SGPLQTNHMT GNSSSLLVGG LVPSFPFPIT 60 PSQLPQQHIH HQQLPQSDQQ LHFFWTSQLQ EIRANTDFKN HNLPLARIKK IMKADEDVKM 120 IAAETPVLFS RACEMFILEL THRSWGQTEH SKRRTLQRSD IASAIAKNQV FDFLVDIVPV 180 EETKEAGVPT MPVGEGLNDS ISYFYDPSKF GSLMMDMRNP EVDCQGLTYT HQHQD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.1 | 1e-51 | NF-YC family protein |