PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN25318.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 670aa    MW: 76332.7 Da    PI: 6.26
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN25318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1132956661374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+av+s d +    lL+r++++asp+gd ++Rla+yf++AL+arla++++  y++ ++++ s    +e l+a+k+f  ++P+ k+s+++aN
  PIN25318.1 295 LRSLLMQCAQAVASYDCRTSYDLLTRIRQHASPRGDGTERLAHYFANALEARLAGNGTASYATGTSTRIS---AAEILKAYKTFITACPFKKMSNMLAN 390
                 689****************************************************777777665555555...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I + ++g++++HiiDf+i +G QWp+L+q L++Rpegpp+l+iTg++ p++g   +e++e tg+rLa+++e+++vpfe+ + +a+++e+++le+L++
  PIN25318.1 391 KTIKNLANGATTLHIIDFGILYGYQWPCLIQILSERPEGPPKLKITGIDFPQPGfrPTERVEDTGRRLARYCERFRVPFEYIA-IAQKWETIKLEDLKI 488
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E l+Vn++++l++++de+v ++s+rd+vL+l+k+++P+++++   +  +n++ F +rf eal ++s++fd ++a +pre+++r+  E+e++g+e++
  PIN25318.1 489 EEHEILVVNSIFRLQNVPDETVMVNSPRDAVLNLIKKINPDMFIHGVVNGTYNTPFFITRFREALFHFSSMFDVFDAVVPREDQDRALFEEEVFGKEVM 587
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg+er+er et+++W+ r  +aG++p+pl+++++k +++ ++  + + ++++e+ ++l++gWk+r   ++S W+
  PIN25318.1 588 NIIACEGTERIERPETYKQWQVRNLRAGLRPLPLDQEIVKHVRRKVKLEYHKDFSMDEDGNWLLQGWKGRVTHAISYWQ 666
                 **************************************************888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MNTLVEGYDF QSNSHSKSGL PEENHAFKYE FNHVLDQFSI PSGSSSSFPV DESSPEGDNS  60
KEFSVPTNWF SPAYDSCSSE GEISKENDHS DAILKFISQM LMEEEDLENK PCMLHDCLAL  120
QATEKSLYDV LNNNQNVQSP NDHFTKTFSS SSSDFGSFLE SNSSPSGDFE SLVSPSDIQY  180
PSTNNLESDL VPFGSSMERI QVSNSYYQSN SREKKNRFRK DRDFIGEQRS SKQFANNISE  240
SEPLEMYDKV LLCSDSEQSK AKKKPPQKER QKGSNRGRPR GGKKQGVVVK EVVDLRSLLM  300
QCAQAVASYD CRTSYDLLTR IRQHASPRGD GTERLAHYFA NALEARLAGN GTASYATGTS  360
TRISAAEILK AYKTFITACP FKKMSNMLAN KTIKNLANGA TTLHIIDFGI LYGYQWPCLI  420
QILSERPEGP PKLKITGIDF PQPGFRPTER VEDTGRRLAR YCERFRVPFE YIAIAQKWET  480
IKLEDLKIEE HEILVVNSIF RLQNVPDETV MVNSPRDAVL NLIKKINPDM FIHGVVNGTY  540
NTPFFITRFR EALFHFSSMF DVFDAVVPRE DQDRALFEEE VFGKEVMNII ACEGTERIER  600
PETYKQWQVR NLRAGLRPLP LDQEIVKHVR RKVKLEYHKD FSMDEDGNWL LQGWKGRVTH  660
AISYWQSASK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein