PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN25073.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 484aa MW: 53901.3 Da PI: 4.9686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN25073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	16	37	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+++F ++ n++rH+r+H PIN25073.1 16 KCEKCSRVFCSPINFRRHLRVH 37 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MDLRQLLEQK RKEYPKCEKC SRVFCSPINF RRHLRVHRGS LNVEKLSLEQ VKEILAFDDV 60 MLKEIPGSSV LNCLASSLRK PDVSTLPQVY LKAGFSLLEK KVTEQFCGGD ADSTVNIIAA 120 DTPTSAEASK PSPLPDSSSK EPVLSINLDS PLESLQPQIF MCLCEVKAWI ADQNAEALRS 180 QKLLVEEEES EQKRQAVLLE SKKQKKLCQD KLEVKEQLYG GNTDLAVIVV ADRQTSAKAS 240 EPSTSSDSSS NAPNLPKSLD SRLKSLQTQR KESDKDIEAQ FGSNREHVNQ GDSHTIEPQV 300 ALRPSSSRGE TSNQISDDKR VVTVGSIPVT LRSHVAQQPP DEALDNCSTE SPMLKMKNAS 360 EKEIKATTSS HGKIKSIPLV DRGNDSEQDA ILEKVHDQIL PGERSTVSQP TDDEDFDNRE 420 NYRALSDENA EHEGCPHYRE DCHVPSDEYA QREFCPYCIA ATREFLAKRW EAAISGEHEI 480 LDLS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MDLRQLLEQK RKEYPKCEKC SRVFCSPINF RRHLRVHRGS LNVEKLSLEQ VKEILAFDDV  60
MLKEIPGSSV LNCLASSLRK PDVSTLPQVY LKAGFSLLEK KVTEQFCGGD ADSTVNIIAA  120
DTPTSAEASK PSPLPDSSSK EPVLSINLDS PLESLQPQIF MCLCEVKAWI ADQNAEALRS  180
QKLLVEEEES EQKRQAVLLE SKKQKKLCQD KLEVKEQLYG GNTDLAVIVV ADRQTSAKAS  240
EPSTSSDSSS NAPNLPKSLD SRLKSLQTQR KESDKDIEAQ FGSNREHVNQ GDSHTIEPQV  300
ALRPSSSRGE TSNQISDDKR VVTVGSIPVT LRSHVAQQPP DEALDNCSTE SPMLKMKNAS  360
EKEIKATTSS HGKIKSIPLV DRGNDSEQDA ILEKVHDQIL PGERSTVSQP TDDEDFDNRE  420
NYRALSDENA EHEGCPHYRE DCHVPSDEYA QREFCPYCIA ATREFLAKRW EAAISGEHEI  480
LDLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-26	C2H2 family protein