 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PIN24916.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
| Family | NF-YC | ||||||||
| Protein Properties | Length: 296aa MW: 33075.4 Da PI: 5.2128 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.2 | 2.1e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v + ++fdfl d+v r
PIN24916.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEVTLKRGAKTVNSLHLKQCVHNFNVFDFLKDTVSR 86
5789**************************************************************************987 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 296 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEVTLKRGAK 60 TVNSLHLKQC VHNFNVFDFL KDTVSRVPDL GGSDAAAEEK SATRRRKISE DEDRNDNESK 120 RIRMHETGHA SSNGRGRGRG RGRGRGRGRG RSSRTLETES FVGRGSSTLE TASSVGNKKY 180 EDTDDGSHQS DENQQDEIAR QDSFVGATDS RTVGQNDADK PVRDFDLNVE LNENGDTEST 240 LVIAPSESPT KPALDVKHED IPGWSLDDMK RMAIDPAQLA HLNRRLDEED EDYDEE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 135 | 144 | RGRGRGRGRG |
| 2 | 135 | 145 | RGRGRGRGRGR |
| 3 | 137 | 146 | RGRGRGRGRG |
| 4 | 137 | 147 | RGRGRGRGRGR |
| 5 | 139 | 148 | RGRGRGRGRG |
| 6 | 139 | 149 | RGRGRGRGRGR |
| 7 | 141 | 150 | RGRGRGRGRG |
| 8 | 141 | 151 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G19490.1 | 5e-64 | NF-YC family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|