PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24909.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 649aa MW: 70995 Da PI: 6.1624

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.7e-07	264	284	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G C Gd C +aHg PIN24909.1 264 PCPEFKK-GSCAKGDACEYAHG 284 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MCSGSKSKLC PFDFEMEAKD KREILHNNCS KLLELAAIDD LAGFIYEVEE RGCDVDELSF 60 WYGRSFGSKK MGYEERTPIL IASLYGSIEV LKYIIGSGKV DVNRACGSDG ATALHCAAAG 120 GSWSSVEVVE LLINASADAK AVDAFGKKPG DLIAPCVKSS SNSKRRTLEM MLNGISIEGG 180 DQVEEEESKT VAKEGSEKKE YPVDVSLPDI NNGIYGTDDF RMYNFKVKPC SRAYSHDWTE 240 CPFVHPGENA RRRDPRKYNY TCVPCPEFKK GSCAKGDACE YAHGVFESWL HPAQYRTRLC 300 KDETGCTRKV CFFAHKPEEL RPLYASTGSA MPSPKSFSVN SLDMTTLSPL SLGSSSLMLS 360 NTSTPPISPS VTCSSPMWQN KVNLTPPALQ LPGSRLKTTL SARDVDFDLE MLGLEKIRTQ 420 QQQRQQLVDE MAGISSPYGR IGDLKPTNLD DVFGSLDPSL LSHLQGLSPN TTSSHLQSPT 480 GLQIRQNTNQ LRASYPSNIS SSPARKYGFD SSASVAAAVM NSRSSAFAKR SQSFIDRTGV 540 NHRAPSLMPS KLSDWSSPDG KLDWGFNGDD ANKLRKSASF GFRSGNAGAP AAMAASGVDE 600 PDVSWVNSLV KDVPSGDGLG LYGYEPKHLD MMMPQWFDQM YIEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MCSGSKSKLC PFDFEMEAKD KREILHNNCS KLLELAAIDD LAGFIYEVEE RGCDVDELSF  60
WYGRSFGSKK MGYEERTPIL IASLYGSIEV LKYIIGSGKV DVNRACGSDG ATALHCAAAG  120
GSWSSVEVVE LLINASADAK AVDAFGKKPG DLIAPCVKSS SNSKRRTLEM MLNGISIEGG  180
DQVEEEESKT VAKEGSEKKE YPVDVSLPDI NNGIYGTDDF RMYNFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYNY TCVPCPEFKK GSCAKGDACE YAHGVFESWL HPAQYRTRLC  300
KDETGCTRKV CFFAHKPEEL RPLYASTGSA MPSPKSFSVN SLDMTTLSPL SLGSSSLMLS  360
NTSTPPISPS VTCSSPMWQN KVNLTPPALQ LPGSRLKTTL SARDVDFDLE MLGLEKIRTQ  420
QQQRQQLVDE MAGISSPYGR IGDLKPTNLD DVFGSLDPSL LSHLQGLSPN TTSSHLQSPT  480
GLQIRQNTNQ LRASYPSNIS SSPARKYGFD SSASVAAAVM NSRSSAFAKR SQSFIDRTGV  540
NHRAPSLMPS KLSDWSSPDG KLDWGFNGDD ANKLRKSASF GFRSGNAGAP AAMAASGVDE  600
PDVSWVNSLV KDVPSGDGLG LYGYEPKHLD MMMPQWFDQM YIEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein