PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24565.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SBP

Protein Properties

Length: 1000aa MW: 111215 Da PI: 6.1559

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.6e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ PIN24565.1 149 VCQVEDCGADLSKAKDYHRRHKVCEMHSKASKALVGNQMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQT 226 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MEAGIGGEAQ LYYGMAPTDL RTVGKRSLEW DPNNWRWDGD LFIATPLNRT PSNYQSRQLF 60 PLETGVTTTR DSSNSSPSDS DELNQGFVKD NRELEKKRRA SAVEDSNLVD EGLSLNLGGR 120 GYAVACNGEV TTGKKTKLAG ATANPNRAVC QVEDCGADLS KAKDYHRRHK VCEMHSKASK 180 ALVGNQMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTQTENVG NNSTVNDNQA 240 SGYLLMSILK ILSNMHSNRS NHADDQNLLS HLLQSLASQG SGSWERNISA HLQESQNLLN 300 NLPSLGNSEI ASVLLSNGSL GQRSRQECYT QPNNEIPRKD GDLHAISQRQ GIVLHTQASP 360 QIYAEGRETA GGRSKLNNFD LNDVYVDSDD GMDDIERSTV RQGLGTVSIG CPSWVQQESH 420 QSSPPQTSGN SDSASAQSPS SSSGEAQSHT DRIVLKLFGK EPSDFPVVLR AQIFDWLSHS 480 PTDIESYIRP GCVVLTIYLR LHESVWEELY SDLSSSLNRL LNCCDDVNFW STGWIYARVQ 540 NQMAFVYNGR VVLNTSLPFG TENYSTILSV KPVAITSAGQ AQFIVKGFNL SRPSMRLLCA 600 LEGNYLEANS EPVEHVDGLE EDIQCLKFSC SVPAVTGRGF IEVEDHGLSS SFFPFIVAED 660 DFCTEIRMLE KEIEMMEIDS LQRGLGRIDV RNEAMQFIHE MGWLLHKFQL KSRVGHEDPS 720 VGFFPFERFK YLMEFSVDRD WCSVVNKLLN ILFYGIVSGG EQPFLEFALS EMGLLHRAVR 780 RNSRSLVEML LRYVPEKVAD ELDSEYKSLV EIDQSSLFRP DVAGPGGLTP LHVAAGRDGS 840 EDILDALTDD PRKVGIGAWK SALDSAGSTP EDYARLRGHY SYIHLVQRKI NKKVSSGHVV 900 VDISDTLSDG TINQKPDVEA GAIFEIGRSE IKRIQRPCGA CAQNLAYRSG SRTLLYKPTM 960 LSMLAIAAVC VCVALVLKSS PQVLFVFRPF RWEMLEYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MEAGIGGEAQ LYYGMAPTDL RTVGKRSLEW DPNNWRWDGD LFIATPLNRT PSNYQSRQLF  60
PLETGVTTTR DSSNSSPSDS DELNQGFVKD NRELEKKRRA SAVEDSNLVD EGLSLNLGGR  120
GYAVACNGEV TTGKKTKLAG ATANPNRAVC QVEDCGADLS KAKDYHRRHK VCEMHSKASK  180
ALVGNQMQRF CQQCSRFHAL QEFDEGKRSC RRRLAGHNKR RRKTQTENVG NNSTVNDNQA  240
SGYLLMSILK ILSNMHSNRS NHADDQNLLS HLLQSLASQG SGSWERNISA HLQESQNLLN  300
NLPSLGNSEI ASVLLSNGSL GQRSRQECYT QPNNEIPRKD GDLHAISQRQ GIVLHTQASP  360
QIYAEGRETA GGRSKLNNFD LNDVYVDSDD GMDDIERSTV RQGLGTVSIG CPSWVQQESH  420
QSSPPQTSGN SDSASAQSPS SSSGEAQSHT DRIVLKLFGK EPSDFPVVLR AQIFDWLSHS  480
PTDIESYIRP GCVVLTIYLR LHESVWEELY SDLSSSLNRL LNCCDDVNFW STGWIYARVQ  540
NQMAFVYNGR VVLNTSLPFG TENYSTILSV KPVAITSAGQ AQFIVKGFNL SRPSMRLLCA  600
LEGNYLEANS EPVEHVDGLE EDIQCLKFSC SVPAVTGRGF IEVEDHGLSS SFFPFIVAED  660
DFCTEIRMLE KEIEMMEIDS LQRGLGRIDV RNEAMQFIHE MGWLLHKFQL KSRVGHEDPS  720
VGFFPFERFK YLMEFSVDRD WCSVVNKLLN ILFYGIVSGG EQPFLEFALS EMGLLHRAVR  780
RNSRSLVEML LRYVPEKVAD ELDSEYKSLV EIDQSSLFRP DVAGPGGLTP LHVAAGRDGS  840
EDILDALTDD PRKVGIGAWK SALDSAGSTP EDYARLRGHY SYIHLVQRKI NKKVSSGHVV  900
VDISDTLSDG TINQKPDVEA GAIFEIGRSE IKRIQRPCGA CAQNLAYRSG SRTLLYKPTM  960
LSMLAIAAVC VCVALVLKSS PQVLFVFRPF RWEMLEYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	137	KKRRASAVEDSNLVDEGLSLNLGGRGYAVACNGEVTTGKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein