PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24303.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 1295aa MW: 144706 Da PI: 9.0241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	1179	1204	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L +H ++ + PIN24303.1 1179 YQCDieGCTMSFGSKQELASHKKNiC 1204 99*******************99866 PP
2	zf-C2H2	13.2	0.00028	1204	1226	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H PIN24303.1 1204 CPvkGCGKKFFSHKYLVQHRRVH 1226 9999*****************99 PP
3	zf-C2H2	11.4	0.00097	1262	1288	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y C+ Cg++F+ s++ rH r+ H PIN24303.1 1262 YICTeaGCGQTFRFVSDFSRHKRKtgH 1288 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1295 aa Download sequence
MAAEVSGGGN IEVSPWLKSM PVAPEYHPTL AEFQDPIAYI FKIEKEASKY GICKIVPPVS 60 AASRKTVIAN FNKSLLARSN DPESGPTFTT RQQQIGFCPR KHRPVQKPVW QSGEKYTLTE 120 FETKAKNFEK SYLKKYAKKG LNALEMETLF WNAMVDKPFP VEYANDMPGS AFVAQKSGGK 180 KNENTVTVGD TEWNMRRVSR ENLSLLRFMK EEIPGVTSPM VYVAMMFSWF AWHVEDHDLH 240 SMNYLHMGAG KTWYGVPREA AVAFEEVIRE HGYGGEINPL VTFATLGEKT TVMSPEVLIS 300 AGVPCCRLVQ NAGEFVVTFP RAYHSGFSHG FNCGEAANIA TPEWLRVAKE AAIRRAAINC 360 SPMVSHYQLL YDLALSLCSR VPKSIGMEPR SSRLKDRKKG EGEMLIKELF FQDMIQNNEM 420 LHILGKGSSI VLLPQNSLSR SSCSSAPPGF QPTTKSRLFP SLCSPDLELK TTSSNACDEF 480 LLDRKQGMKP MRGYTVNTKT DSSSLSSSEA PSLSPHAEKM ETGKNKASQC EQGLFSCVTC 540 GILCFACVAI VQPTEAAAHY MMSADCGVFS DWGASDNDHN HIRDAKTPNT NLCSELTPSK 600 TQNGLFDIPT SADQLQSVVE ESVGMVSNSK PHEEPSSLGL LALAYGISSD SEEDETEAGI 660 AIEGCRTSKS DSPRNGHTSD TIDSKINHRK NTSSQISDYN AGDRETQNFD CSDEFRTKNF 720 PVIESNSLTH RFRHQMETRH DTSNSLSHKT EPAHSTPLTQ LEDTTMPFSS RSDEDSSRFH 780 VFCLQHAMQV EKQLSEVGGA HVFLVCHPDY PKLESQAKKV GEELKSDHTW SEISFREATE 840 ADEEIIRRAL ESENAIHENG DWAVKLGINL FYSANLSRSP LYCKQMHYNF IIYSAFGRRP 900 PTDNSTSKAD LEGRGLGRQK KIVVAGKWCG KVWMSSQAHP LLVNKDLQEH KPELGIAARI 960 KPDLKSEKPS EGSQAAAVAS AIRKTSRKRK NNVKNSSHVK EKSHEDGKKN ESSVVVSLSN 1020 CVKQSKRKRG SRSLKDENPE PKSLDESSEG IQLSDSCKQG KSRRKTKRVK KETSDAENLG 1080 ESSDEFPLSD SWKQIKREAR KMKKEKTAEP PKNQQKSKKP LNPLTEDEVE GGPSTRLRKR 1140 TTKPSEVKPL LKKQQKNIKK VPAIKVSNKA KVKDEEAEYQ CDIEGCTMSF GSKQELASHK 1200 KNICPVKGCG KKFFSHKYLV QHRRVHMDDR PLKCPWRGCK MTFKWAWART EHIRVHTGAR 1260 PYICTEAGCG QTFRFVSDFS RHKRKTGHSP KKARG

Sequence ? help Back to Top

Protein Sequence Length: 1295 aa Download sequence

MAAEVSGGGN IEVSPWLKSM PVAPEYHPTL AEFQDPIAYI FKIEKEASKY GICKIVPPVS  60
AASRKTVIAN FNKSLLARSN DPESGPTFTT RQQQIGFCPR KHRPVQKPVW QSGEKYTLTE  120
FETKAKNFEK SYLKKYAKKG LNALEMETLF WNAMVDKPFP VEYANDMPGS AFVAQKSGGK  180
KNENTVTVGD TEWNMRRVSR ENLSLLRFMK EEIPGVTSPM VYVAMMFSWF AWHVEDHDLH  240
SMNYLHMGAG KTWYGVPREA AVAFEEVIRE HGYGGEINPL VTFATLGEKT TVMSPEVLIS  300
AGVPCCRLVQ NAGEFVVTFP RAYHSGFSHG FNCGEAANIA TPEWLRVAKE AAIRRAAINC  360
SPMVSHYQLL YDLALSLCSR VPKSIGMEPR SSRLKDRKKG EGEMLIKELF FQDMIQNNEM  420
LHILGKGSSI VLLPQNSLSR SSCSSAPPGF QPTTKSRLFP SLCSPDLELK TTSSNACDEF  480
LLDRKQGMKP MRGYTVNTKT DSSSLSSSEA PSLSPHAEKM ETGKNKASQC EQGLFSCVTC  540
GILCFACVAI VQPTEAAAHY MMSADCGVFS DWGASDNDHN HIRDAKTPNT NLCSELTPSK  600
TQNGLFDIPT SADQLQSVVE ESVGMVSNSK PHEEPSSLGL LALAYGISSD SEEDETEAGI  660
AIEGCRTSKS DSPRNGHTSD TIDSKINHRK NTSSQISDYN AGDRETQNFD CSDEFRTKNF  720
PVIESNSLTH RFRHQMETRH DTSNSLSHKT EPAHSTPLTQ LEDTTMPFSS RSDEDSSRFH  780
VFCLQHAMQV EKQLSEVGGA HVFLVCHPDY PKLESQAKKV GEELKSDHTW SEISFREATE  840
ADEEIIRRAL ESENAIHENG DWAVKLGINL FYSANLSRSP LYCKQMHYNF IIYSAFGRRP  900
PTDNSTSKAD LEGRGLGRQK KIVVAGKWCG KVWMSSQAHP LLVNKDLQEH KPELGIAARI  960
KPDLKSEKPS EGSQAAAVAS AIRKTSRKRK NNVKNSSHVK EKSHEDGKKN ESSVVVSLSN  1020
CVKQSKRKRG SRSLKDENPE PKSLDESSEG IQLSDSCKQG KSRRKTKRVK KETSDAENLG  1080
ESSDEFPLSD SWKQIKREAR KMKKEKTAEP PKNQQKSKKP LNPLTEDEVE GGPSTRLRKR  1140
TTKPSEVKPL LKKQQKNIKK VPAIKVSNKA KVKDEEAEYQ CDIEGCTMSF GSKQELASHK  1200
KNICPVKGCG KKFFSHKYLV QHRRVHMDDR PLKCPWRGCK MTFKWAWART EHIRVHTGAR  1260
PYICTEAGCG QTFRFVSDFS RHKRKTGHSP KKARG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1064	1106	RKTKRVKKETSDAENLGESSDEFPLSDSWKQIKREARKMKKEK
2	1067	1109	RKTKRVKKETSDAENLGESSDEFPLSDSWKQIKREARKMKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein