PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN23788.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21948.7 Da PI: 8.002 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.6e-40 | 17 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+k+C++apyf ++q +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+aela+++ PIN23788.1 17 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVGHIFTLQQQVVNLQAELAYTQ 115 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ PIN23788.1 116 AR 117 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MSNGSGGSGG GGGGGGPCGA CKFLRRKCVK GCIFAPYFDS DQGTAHFAAV HRVFGASNAS 60 KLLLRIPPHR RLDAVITLCY EALARVRDPV YGCVGHIFTL QQQVVNLQAE LAYTQARIST 120 LQHGPSLPHQ PPSLSSSNPR SSSNFACNST VQTAPFDASL SEETSTEIVS LCNSVDQELE 180 DGDLQSLARE YVSRYFPGVR FRPPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 1e-67 | LBD family protein |