PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23681.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family RAV
Protein Properties Length: 350aa    MW: 38884.6 Da    PI: 9.8272
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.38.9e-1459107155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  PIN23681.1  59 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 107
                 689***9788.8*********3.....5*************************98 PP
2B31048.2e-33185284196
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   e++l++ 
  PIN23681.1 185 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGILLNFEDSGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDIVSFQRSTGPEKQLYID 283
                 89****************************88999****************************************************876677767776 PP

                 E CS
          B3  96 v 96 
                 +
  PIN23681.1 284 W 284
                 6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MDGSSVDEST TTDSISITPP SNSPPTKPPE SLCRVGSGAS VIVDSENGVE AESRKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDT AAQRFRGRDA VTNFKTLLEK  120
EDEIEAAFLN SHSKAEIVDM LRKHTYNDEL EQSRRNYGGN RAAKDGIFSF SSGGDRAAKA  180
REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQSGNTSK GILLNFEDSG GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK NLRAGDIVSF QRSTGPEKQL YIDWKARNNG SVPGPVHPVQ  300
MVRLFGVNIF EGPRNGGPVA IDGSCSGKRM IEMELLGLNS SKKQRVINAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-149RAV family protein