PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN23372.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 657aa MW: 73180.7 Da PI: 6.779

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN23372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.1	1.9e-24	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF+ + +++ l PIN23372.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGQVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFM--RAENGDL 215 89**************************996555555..89*******************************************..4488889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PIN23372.1 216 CIGIRRA 222 **996 PP
2	Auxin_resp	113.2	2.4e-37	274	357	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pra+t+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gtv++ + +dp+rWp+S+Wr+L+ PIN23372.1 274 AATLAASGQPFEVVYYPRAGTPEFCVKASLVKAAIQIRWCSGMRFKMAFETEDSSRISWfMGTVSSAQVADPIRWPDSPWRLLQ 357 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MITFMESKEN LKESEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHFEH ASSNFDLRDR 60 PRFPSYVPCR VSSIKFLADP ETDEVFAKIR LVPITRNEVE FGNDGDVEIN GLDNQEKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGQV WKFRHIYRGT 180 PRRHLLTTGW SSFVNQKKLV AGDSIVFMRA ENGDLCIGIR RAKRGIGGGP EVPSGWNSCA 240 SVGGFSPFYR DDESKLTRNG DNGGRVKMED VVEAATLAAS GQPFEVVYYP RAGTPEFCVK 300 ASLVKAAIQI RWCSGMRFKM AFETEDSSRI SWFMGTVSSA QVADPIRWPD SPWRLLQVRW 360 DEPDLLQKVK RVSPWLVELV SNMPTIHLSP FSPPHKRLRE HQDFPFDGHL PLPAFSGNHL 420 HRSNNPFDCL SDNAPAGMQG ARHVRYGLSL PDLHLSKLQS SFYPVGFLPL DRPSVPTSEP 480 GYNDVSCLLT IGSSACKSKV SDSRKSTPFL LFGQPILTEK QISLSCSSDT VSTVRTGTSS 540 SDCNADKIGS SSDAPERSSC EGFQSEFSLE NSVCKVFMES EDVGRTLDLS LLGSYEELYE 600 KLAIMFRIEI SEILNHVLYR DRTGAVRQLG EEPFRNFIKT ARRLTVLSDS SSDNAGL

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MITFMESKEN LKESEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHFEH ASSNFDLRDR  60
PRFPSYVPCR VSSIKFLADP ETDEVFAKIR LVPITRNEVE FGNDGDVEIN GLDNQEKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGQV WKFRHIYRGT  180
PRRHLLTTGW SSFVNQKKLV AGDSIVFMRA ENGDLCIGIR RAKRGIGGGP EVPSGWNSCA  240
SVGGFSPFYR DDESKLTRNG DNGGRVKMED VVEAATLAAS GQPFEVVYYP RAGTPEFCVK  300
ASLVKAAIQI RWCSGMRFKM AFETEDSSRI SWFMGTVSSA QVADPIRWPD SPWRLLQVRW  360
DEPDLLQKVK RVSPWLVELV SNMPTIHLSP FSPPHKRLRE HQDFPFDGHL PLPAFSGNHL  420
HRSNNPFDCL SDNAPAGMQG ARHVRYGLSL PDLHLSKLQS SFYPVGFLPL DRPSVPTSEP  480
GYNDVSCLLT IGSSACKSKV SDSRKSTPFL LFGQPILTEK QISLSCSSDT VSTVRTGTSS  540
SDCNADKIGS SSDAPERSSC EGFQSEFSLE NSVCKVFMES EDVGRTLDLS LLGSYEELYE  600
KLAIMFRIEI SEILNHVLYR DRTGAVRQLG EEPFRNFIKT ARRLTVLSDS SSDNAGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein