PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23235.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 548aa    MW: 62271.2 Da    PI: 6.0832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.43.5e-841735431374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn.sseelaalklfsevsPilkfshlt 97 
                 l++ Ll  Ae v++++ e  +++L++ + ++s +g+p++Rl++yfteAL++++ r++  +  k l  +  ++ + ++ + +++ ++++ +P+ +++ l+
  PIN23235.1 173 LIQNLLYSAEKVDQKKYEHSRKFLEECERMSSCTGSPIERLVFYFTEALHEKIDRETGLITpKGLGKKIPDPLEmMKCTNTFMITLQKKCPLTQIAKLV 271
                 5789999************************************************444433144433333333324444455556************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   +a+++ v+++++vH+iD+ i  G+Q   L+q+La+R++ p  +l+iT+vg    +sk++leetg+rL  fA++l+++f+f+v++++++  l+ + ++
  PIN23235.1 272 GIEALVDHVAESDKVHVIDIHIVSGVQCTILMQTLAARSGRPIqHLKITAVGT---KSKTTLEETGRRLMAFANSLNLKFSFHVVMVEDILYLNKNLFE 367
                 ***************************************65544*********...68***************************************** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 ++p+E++ +  ++ l+++  ++  le+    ++++ ksl P+v++++e e+++ns++Fl rf+eal +y a+fds+++ l +++e+r+  E++++g + 
  PIN23235.1 368 LDPNEVVSIYAAYGLKNMIGRPDRLEH----LMNVAKSLGPRVMIITEIETNCNSPNFLPRFVEALFFYGAFFDSVAECLKNDEENRREAEERCFGSAM 462
                 ******************977777777....******************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nvva+eg+er+ r  +   Wr+ l+++G+ +  ls +   qa+l+ ++++ ++  ++  + ++l++gWk+ pL++vSaW+
  PIN23235.1 463 RNVVATEGDERKIRYVSIDVWRAFLSRFGLAETGLSMSCLYQANLMRENFPfGRSCTLGMDGECLTIGWKGTPLITVSAWK 543
                 ***************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MFHFDQLNSN EVSNKSSELE GSKTEFFQEQ DNAADLQFSM SDNEIHRQVQ NYKYFTNLDD  60
LYLDVVSPPF QSCDDDINRI LDTDYKNSSL IKSKGKNAFP LASFEMLRKH RSKRLRSNEE  120
TSNLGPMMST ERIIELAAEH FICKELSSFS HPYPGSILSQ DSILGQDSKG FQLIQNLLYS  180
AEKVDQKKYE HSRKFLEECE RMSSCTGSPI ERLVFYFTEA LHEKIDRETG LITPKGLGKK  240
IPDPLEMMKC TNTFMITLQK KCPLTQIAKL VGIEALVDHV AESDKVHVID IHIVSGVQCT  300
ILMQTLAARS GRPIQHLKIT AVGTKSKTTL EETGRRLMAF ANSLNLKFSF HVVMVEDILY  360
LNKNLFELDP NEVVSIYAAY GLKNMIGRPD RLEHLMNVAK SLGPRVMIIT EIETNCNSPN  420
FLPRFVEALF FYGAFFDSVA ECLKNDEENR REAEERCFGS AMRNVVATEG DERKIRYVSI  480
DVWRAFLSRF GLAETGLSMS CLYQANLMRE NFPFGRSCTL GMDGECLTIG WKGTPLITVS  540
AWKFSSDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-46GRAS family protein