PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22473.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

NF-YC

Protein Properties

Length: 225aa MW: 24681.8 Da PI: 4.848

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178	8.7e-56	35	138	2	102
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 l++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivp PIN22473.1 35 LQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 133 89**998899*********************************************************************************** PP NF-YC 98 rdelk 102 rde+k PIN22473.1 134 RDEVK 138 875 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MEQNNQQQGA AQPPTAGYPP QPPYQHLLQQ QQQHLQMFWT YQRQEIEQVN DFKNHQLPLA 60 RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL QKNDIAAAIT 120 RTDIFDFLVD IVPRDEVKDE ASALGGIVGP PAGAAGVTGV PYYYPPMGQP MMGRPAVPGV 180 DPGVYVQAPP PSQAWQSVWQ NTAEDGSYAS GGGASSGQGS LDGQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-81	NF-YC family protein