PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN22464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 18207.8 Da PI: 8.6751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 7e-40 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++dC ++pyf +++ kfa vhk+FGasnv+k+l+++pe++r++a++slvyeAe+r+rdP+yG++g i +lq+++ +l+++l l+++ PIN22464.1 12 SCAACKFLKRRCSPDCQFRPYFRSDEYDKFAKVHKVFGASNVIKILNQVPEDQRPAAVNSLVYEAEVRLRDPIYGCIGAIASLQHKMVKLQHDLILARA 110 6*******************************************************************************************9988876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence |
MKNNQEPRSS SSCAACKFLK RRCSPDCQFR PYFRSDEYDK FAKVHKVFGA SNVIKILNQV 60 PEDQRPAAVN SLVYEAEVRL RDPIYGCIGA IASLQHKMVK LQHDLILARA RLASYVDKCH 120 SFSFLDDGFQ RYGEFNGVVE SHDRNLVFLD QFGRFCFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 6e-57 | LBD family protein |