PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22261.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 628aa MW: 70312.4 Da PI: 6.695

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC+ C++ F ++ n++rHir+H PIN22261.1 63 KCERCSREFCSPINYRRHIRLH 84 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MKSEKGNDSL DTLIRQANSK EPLLPFSRTG DNPVQWIQLL HALDQPDLPC WPSMTPIKIQ 60 MQKCERCSRE FCSPINYRRH IRLHRRSLNV NKESHKDRDL LAAYWDKLSL EEAKEVVSFD 120 NVMLKEVPGS AVITALASSL RKPGVWTLPQ VYVKAGSALL DIIQAKPSRL PISSQELFSI 180 IDDASERTFL CAGRAESLQK YVFDGEAAKN TLDLKNLVAC TSFLFEQQLV KAWVVNKDAE 240 ALRCHKLLVE EEEAAQKRQA ELLGRKKLKK LRQKEQKVKE QLYQCKVDVI VDVADGPVLA 300 ETSGPSSLSH SSSNSVDVPA NLDSCLESVQ FQTEATEIDI EAQIDLSSRL INQCNSPTNG 360 PQMVDENSHM LQRETQYGFH ASENLQKSES IPKIGSSKNR TLLNQSKVWA KKNKMGSDAV 420 SLKPSLQGEI SRRIEGNNCE VVIGSISIPL NSCASAQDTC RAEAEPAMFT NHTASKLWRP 480 VNLVETKDIS SVERENEDSG GPVVLERVND RIMSTERCES SQSTDDDEFD NREQYHLHSD 540 GNFPFSSVAA KELLEQRWKE AISGDHVKLV LSSCRGPPRL SDVQDSNSIA SNSSDLQERN 600 LRSAQVNFRT KTEKISKIHY IPKQKAAV

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MKSEKGNDSL DTLIRQANSK EPLLPFSRTG DNPVQWIQLL HALDQPDLPC WPSMTPIKIQ  60
MQKCERCSRE FCSPINYRRH IRLHRRSLNV NKESHKDRDL LAAYWDKLSL EEAKEVVSFD  120
NVMLKEVPGS AVITALASSL RKPGVWTLPQ VYVKAGSALL DIIQAKPSRL PISSQELFSI  180
IDDASERTFL CAGRAESLQK YVFDGEAAKN TLDLKNLVAC TSFLFEQQLV KAWVVNKDAE  240
ALRCHKLLVE EEEAAQKRQA ELLGRKKLKK LRQKEQKVKE QLYQCKVDVI VDVADGPVLA  300
ETSGPSSLSH SSSNSVDVPA NLDSCLESVQ FQTEATEIDI EAQIDLSSRL INQCNSPTNG  360
PQMVDENSHM LQRETQYGFH ASENLQKSES IPKIGSSKNR TLLNQSKVWA KKNKMGSDAV  420
SLKPSLQGEI SRRIEGNNCE VVIGSISIPL NSCASAQDTC RAEAEPAMFT NHTASKLWRP  480
VNLVETKDIS SVERENEDSG GPVVLERVND RIMSTERCES SQSTDDDEFD NREQYHLHSD  540
GNFPFSSVAA KELLEQRWKE AISGDHVKLV LSSCRGPPRL SDVQDSNSIA SNSSDLQERN  600
LRSAQVNFRT KTEKISKIHY IPKQKAAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	271	GRKKLKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-115	C2H2 family protein