PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN22069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25869.3 Da PI: 6.9735 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.2 | 1.2e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC l p++ p++q++++ +++k++G++ +++l++a+p++ r+++++sl+ eA+ r+ +PvyG+vg++ +++++ +q+++e+ PIN22069.1 4 SCNGCRVLRKGCSQDCSLKPCLqwiksPQSQANATLFLAKFYGRAGLINLIDAAPTHLRPEVFRSLLHEACGRIINPVYGSVGLMYSGNWRRCQAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l+++ PIN22069.1 103 VLQGA 107 98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MRMSCNGCRV LRKGCSQDCS LKPCLQWIKS PQSQANATLF LAKFYGRAGL INLIDAAPTH 60 LRPEVFRSLL HEACGRIINP VYGSVGLMYS GNWRRCQAAV EAVLQGAPLI KQVTRDDDHD 120 DSSTAAQLQA CDIRHLSAGG VRSGNRFKRS AKSQVDSVGE AEFLIESETK FTITGWDCGE 180 DELKRAPSHD SFSVETVESA LVNPDEKPVW GIKPEPTGLE LTLGLNSVAA QTYLSTV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-69 | LBD family protein |