PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20572.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

bHLH

Protein Properties

Length: 406aa MW: 42571.6 Da PI: 6.6842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.9e-12	234	279	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + v+Y+k Lq PIN20572.1 234 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIVDYVKFLQ 279 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MQPIIGEFAA MNNRNSLLNQ HQIPALQEIH NHGQPQTSSS PSFDPTSSQD DFLEQMLSSV 60 PSAGSSFPWV DEQSPSGLFG GHLEEQSAAV LASKMRQHQI SSGAARALML QQQLLLSRSL 120 GTANGLRPPT GAEAGFIPMP LGEHNDVVDG GSFKTANSTN DASVKSLFNG IAGSLGQTLN 180 PQPQHFNHSQ AQNFASPAAG ASPGMSQPAA SGGAVAGQQK PRVRARRGQA TDPHSIAERL 240 RRERIAERMK ALQELVPNAN KTDKASMLDE IVDYVKFLQL QVKVLSMSRL GGAAAVAPLV 300 ADTSSEGRSI DGTQTASSSQ NDSMKVAEQQ VAKLMEEDMG SAMQYLQGKG LCLMPVSLAT 360 AISATRPPSN HPLLNAGDAA GPTSPSLSVL TVQSAATGEP NSVSKP

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MQPIIGEFAA MNNRNSLLNQ HQIPALQEIH NHGQPQTSSS PSFDPTSSQD DFLEQMLSSV  60
PSAGSSFPWV DEQSPSGLFG GHLEEQSAAV LASKMRQHQI SSGAARALML QQQLLLSRSL  120
GTANGLRPPT GAEAGFIPMP LGEHNDVVDG GSFKTANSTN DASVKSLFNG IAGSLGQTLN  180
PQPQHFNHSQ AQNFASPAAG ASPGMSQPAA SGGAVAGQQK PRVRARRGQA TDPHSIAERL  240
RRERIAERMK ALQELVPNAN KTDKASMLDE IVDYVKFLQL QVKVLSMSRL GGAAAVAPLV  300
ADTSSEGRSI DGTQTASSSQ NDSMKVAEQQ VAKLMEEDMG SAMQYLQGKG LCLMPVSLAT  360
AISATRPPSN HPLLNAGDAA GPTSPSLSVL TVQSAATGEP NSVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	244	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-61	bHLH family protein