PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN20379.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 915aa    MW: 101566 Da    PI: 6.3736
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN20379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24134235199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  PIN20379.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQAPPC-QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENNQLL 229
                 99****************************98555566.59************************************************..7888889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  PIN20379.1 230 LGIRRA 235
                 ***997 PP
2Auxin_resp119.92e-39260343183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  PIN20379.1 260 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 343
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    
MRLSSSSSTT TTGFTAQPEE GETKCLNSEL WHACAGPLVS LPQVGSRVVY FPQGHSEQVA  60
ASTNKEVDST IPNYPGLQPQ LICQLHNVTM HADIETDEVY AQMTLQPLSP QEQKDLCLLP  120
EELGNPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDYSQAPP CQELIAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVIF IWNENNQLLL GIRRASRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLAKY AKAVYHTRVS  300
VGMRFRMLFE TEESSVRRYM GTITGIGDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFSLRL KRPWPSGLPS FPGLRDGDMG MNSPFTWLRG SIGDQGIQSL  420
NFQRFGVSPW MQPRLDTPML GLQPDIYQVM AAAALQDTGS LDPSKLANQS LLQFQQNVPN  480
ASTSLIQNQV LQQSHSQPTF LQNFPENNVV SQAQILQQQL QLRQQFNDQQ RQQLQQQQQQ  540
QQQREQQVHQ SQQVHSHYQG QETKKPISTG SQIGPVSESQ FTSLQSLSST SQLQNFSDLI  600
GNHMTPSTNS SVQSLLTSFS REGASHQVNM HGPNPLVSNS SSSKRVALDP QLPPKVSQFG  660
VPHPQEFVTP TSKVTDLSTL LPPFPGREFP DFHSMTDSHN NMLFGANTDS SAMMMNGIST  720
LRNTSNENVS LSMPYTTPAF ASAAGSDFPL NSDMTTSSCV DESGYLQSSD NVDQTNPPPG  780
TFVKVHKSGS FGRSLDISKF SSYNELRSEL ARLFGLEGLL EDPQRSGWQL VFVDRENDVL  840
LLGDDPWQEF VNSVWYIKIL CPQEVQQMGK EGLNLPNSVQ SHCLSSNGNT CDDYMSRNDS  900
RSSLNGIPSV GSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein