PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN20294.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 598aa    MW: 65857.6 Da    PI: 8.4048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN20294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.57.3e-1052315983374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +  +++A a+s+ +++ a ++ +rl++ a+p+g++ qRl+ y++ AL++r++     +    +p ++se   +e++++++++++vsP++k+++++aN a
  PIN20294.1 231 QSFMDVAAAISDTKQNVAAKIFTRLQQVANPRGTSEQRLTVYMVLALKSRVYP----TE---HPPPASELYGKEHVSSTQMLYDVSPCFKLGFMAANLA 322
                 67899***********************************************9....33...3444444459*************************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Il+a++++  +++H++Df+i++G+Q++ Ll+aLa+R+ e++  + iT++ + ++g  e+l+ +g+ L+ +A++lgv f+f++   +++++l+ e+L ++
  PIN20294.1 323 ILDATSEQgfQKIHVLDFEIGHGGQYMHLLHALAARKcENKRAVTITTFTDFATGGDEKLKIVGQELKALANKLGVCFNFSI-KNSNITELSREKLGIE 420
                 *****99988***************************99999*********9999**************************9.999************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+EalaVn++++l++l+desv++e+ rd++L+ vkslsP v++vveqe++ n++++  r+ e  e+y alfdslea++p+++ +r+ +E++ lgr++ n
  PIN20294.1 421 PDEALAVNFAFKLYKLPDESVTTENLRDDLLRRVKSLSPAVMTVVEQEINANTAPLTVRVREVSEHYGALFDSLEATVPAHNPDRVRIEEA-LGRKLGN 518
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+r+++aGF+pvp+++ + ++ +  l+ v   + g++v e+sg +++gW++r+L++++aWr
  PIN20294.1 519 TVACEGRDRVERCELFGKWRARMSMAGFRPVPMGQPISESLRVKLNSVTrgNSGFTVIEQSGGICFGWMGRTLTVACAWR 598
                 **********************************************99887889*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    
MSSGFSGGGA PDFFIAGRRS STTNFKAQQQ FSFRSPLSGT LRDPNAQIRR PDFSGKRSLS  60
EIQEQNQERL GFYFRNVKQR PNYQHASPIS TLSPVDFSPA PFISPEVSSV PILQQHRLQP  120
LTLSNSIFSP NLSMNKGNGD MGPGTGRDIM GLGSESEKKM MNHRLQELEK ELLGDEEDGE  180
GVSAVTNSEW SDTIRNLINP TRNQISPSPT TSSSSSCCST SASSPIPCTK QSFMDVAAAI  240
SDTKQNVAAK IFTRLQQVAN PRGTSEQRLT VYMVLALKSR VYPTEHPPPA SELYGKEHVS  300
STQMLYDVSP CFKLGFMAAN LAILDATSEQ GFQKIHVLDF EIGHGGQYMH LLHALAARKC  360
ENKRAVTITT FTDFATGGDE KLKIVGQELK ALANKLGVCF NFSIKNSNIT ELSREKLGIE  420
PDEALAVNFA FKLYKLPDES VTTENLRDDL LRRVKSLSPA VMTVVEQEIN ANTAPLTVRV  480
REVSEHYGAL FDSLEATVPA HNPDRVRIEE ALGRKLGNTV ACEGRDRVER CELFGKWRAR  540
MSMAGFRPVP MGQPISESLR VKLNSVTRGN SGFTVIEQSG GICFGWMGRT LTVACAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134GRAS family protein