PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN19943.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

bHLH

Protein Properties

Length: 659aa MW: 72108.4 Da PI: 5.4575

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN19943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	480	525	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L PIN19943.1 480 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 525 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MNIWTGNSAG ATATAAVEGD TMMDTLISSA ADLTSFWPTS CTIQQSPYAP TPSPPPIADH 60 SKIPVVADAQ FFNQETLQQR LLALIEGARE SWTYAIFWQS SVVDYEGPTV LGWGDGYYKG 120 EEDKGKRKTT SSPAEQEHRK KVLRELNSLI SGPQAIPDDA VDEEVTDTEW FFLISMTQSF 180 VNGSGIPGQA LYSSSPVWVT GPERLAASHC ERARQALGFG LQTLVCIPSS NGVVELGSTE 240 VIFQSSDLMK KVRILFNFNG IELGSGSGSG AWALADNDPA ALWLTDPSSS EMKDSLNNNN 300 INNNNTNGQG TSVPSSKQNV SGNENPSTSS TLTENTQQQI PGHTRELNFS EFGFNGSGNV 360 RNNVNCKRES AEILNFGENT KIGVANGNGN LFGVQGENNN NNKKRSPSSN EEGILSFTSG 420 VILSSSDVVK TDNGCGVESD HSDLEASVVK GVENSRVVDP EKRPRKRGRK PANGREEPLN 480 HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIA YINELKSKVK NVESDKEDLR 540 SQLESLKKEL STKETRHHAP PPPENELKIC GNTSVDMDMD IDVKIIAWDA MIRIQCSRKN 600 HPAAKLMVAL RELQLEVHHA SVSVVNDLMI LQATVKMEGR FFSQDQLRKE LKSKVAQSH

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MNIWTGNSAG ATATAAVEGD TMMDTLISSA ADLTSFWPTS CTIQQSPYAP TPSPPPIADH  60
SKIPVVADAQ FFNQETLQQR LLALIEGARE SWTYAIFWQS SVVDYEGPTV LGWGDGYYKG  120
EEDKGKRKTT SSPAEQEHRK KVLRELNSLI SGPQAIPDDA VDEEVTDTEW FFLISMTQSF  180
VNGSGIPGQA LYSSSPVWVT GPERLAASHC ERARQALGFG LQTLVCIPSS NGVVELGSTE  240
VIFQSSDLMK KVRILFNFNG IELGSGSGSG AWALADNDPA ALWLTDPSSS EMKDSLNNNN  300
INNNNTNGQG TSVPSSKQNV SGNENPSTSS TLTENTQQQI PGHTRELNFS EFGFNGSGNV  360
RNNVNCKRES AEILNFGENT KIGVANGNGN LFGVQGENNN NNKKRSPSSN EEGILSFTSG  420
VILSSSDVVK TDNGCGVESD HSDLEASVVK GVENSRVVDP EKRPRKRGRK PANGREEPLN  480
HVEAERQRRE KLNQRFYALR AVVPNVSKMD KASLLGDAIA YINELKSKVK NVESDKEDLR  540
SQLESLKKEL STKETRHHAP PPPENELKIC GNTSVDMDMD IDVKIIAWDA MIRIQCSRKN  600
HPAAKLMVAL RELQLEVHHA SVSVVNDLMI LQATVKMEGR FFSQDQLRKE LKSKVAQSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	470	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-161	bHLH family protein