PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19850.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family NF-YA
Protein Properties Length: 306aa    MW: 33967 Da    PI: 8.328
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.3e-33157213158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  PIN19850.1 157 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-VKARKPYLHESRHQHALKRVRGSGGRF 213
                 57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDNLNEQHFL QTISKNLSFE LDYSAKRGQE VKHINFQLQD QHSSSTESTA MGKTSSQDQC  60
ASSDSGHDES FGKNGQDPRA ALFLCNPELS INASQAEISQ PIVSCCLEKI PMQFPYAYSD  120
PYITGLYAAY GPHNMIQPQL MAATAGRVPL PVDLPEDGPI YVNAKQYHGI LRRRQSRAKL  180
EAQNKLVKAR KPYLHESRHQ HALKRVRGSG GRFLSTKKSQ QFDSLPETSS QGTISDSYLH  240
NQKMLISNEH QIEANTEGTR VSTAEVVLQQ QPDGRLSSLP SHMGISIQSS SGLVLNGNRH  300
YASIVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-44NF-YA family protein