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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIN19060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 287aa MW: 31637.1 Da PI: 5.3407 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 58.1 | 2e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++aded+ +i+ +P l+ska elf+ +l +++ + + +t++ s ++++v++ ++fdfl d+v +
PIN19060.1 6 DTRFPAARIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCDQTYEITLRKGAKTVNSSHLKQCVQSFNVFDFLRDTVGK 86
5789*************************************************************************9965 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 287 aa Download sequence |
MRRKLDTRFP AARIKKIMQA DEDIGKIAMA VPLLVSKALE LFLQDLCDQT YEITLRKGAK 60 TVNSSHLKQC VQSFNVFDFL RDTVGKVPDL GGSDAAAVDR SATKRRKISG DEECVMEDES 120 QRISMDETGL TSGRGRGRGR GRGRGRGRGR GRGRGRRAVQ RESAVPYEKF EDDPDISNQN 180 GESPREHLGT SNNVMDVADS RTTSGKDADK SVINFDLNVE LNEKGDPSTS SAGTPSESLK 240 KPAPDAKHED IPGWSLHDIE RMAVDPVQLA NLNRGMDVED EDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 134 | 143 | RGRGRGRGRG |
| 2 | 134 | 144 | RGRGRGRGRGR |
| 3 | 136 | 145 | RGRGRGRGRG |
| 4 | 136 | 146 | RGRGRGRGRGR |
| 5 | 138 | 147 | RGRGRGRGRG |
| 6 | 138 | 148 | RGRGRGRGRGR |
| 7 | 140 | 149 | RGRGRGRGRG |
| 8 | 140 | 150 | RGRGRGRGRGR |
| 9 | 142 | 151 | RGRGRGRGRG |
| 10 | 142 | 152 | RGRGRGRGRGR |
| 11 | 144 | 153 | RGRGRGRGRG |
| 12 | 144 | 154 | RGRGRGRGRGR |
| 13 | 146 | 155 | RGRGRGRGRG |
| 14 | 146 | 156 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G19490.1 | 7e-62 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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