PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19020.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 525aa    MW: 58007.7 Da    PI: 7.1855
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23124225299
                 EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  kvltpsd+++ g +++p+ +a+++        +++++   l+l+d+ ++ W++++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ +++s+ el+
  PIN19020.1 124 SKVLTPSDANNGGGFSVPRYCADSIfppldftAEPPAQ--NLILKDTLNQPWRFRHIYRGTPRRHLLTTGWSKFVNAKRLIAGDTVVFM-KKNSTNELF 219
                 599***************************97656655..6************************************************.556999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                  +++r+
  PIN19020.1 220 AGIRRA 225
                 999986 PP
2Auxin_resp76.47.4e-26247327483
  Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 +a+ ++ FevvY+Pra++++Fvv + kve+al++ +++Gm++k+a+e+ed s+ ++ +Gt+ +    ++  W +S+Wr+L+
  PIN19020.1 247 KAARGMEFEVVYYPRAGSPDFVVAAGKVEEALRIGWCAGMQVKIAVESEDPSRLTWvQGTILSAALPSSGPWCRSPWRMLQ 327
                 688899*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    
MATPPPDAVP FEVDSAVWRA VAGPSIQIPA LNSHVYYFPQ GHLEHSSASS SATNATTSDS  60
IGNLKVDFIS PLIPCQIVSI NLLIHPSSEQ AFVKFLLQPL HAREQRLENN NRNDNNENDV  120
VFYSKVLTPS DANNGGGFSV PRYCADSIFP PLDFTAEPPA QNLILKDTLN QPWRFRHIYR  180
GTPRRHLLTT GWSKFVNAKR LIAGDTVVFM KKNSTNELFA GIRRAKQLVN NSGENSAKSK  240
VLEAIGKAAR GMEFEVVYYP RAGSPDFVVA AGKVEEALRI GWCAGMQVKI AVESEDPSRL  300
TWVQGTILSA ALPSSGPWCR SPWRMLQVSW DKPEVSSSME RVNPWQVEYI TPTPPLQYSS  360
LPALKKFKPS QHQELLTNGA GEFCFSVTDL TGSSASMASH MYHTVLNSFP FPASMQGARQ  420
DQDIHIPYLS NSEPRADIYS SQRFTDLLKN GIEQQEKAVS TALSIGQQAH SSSTQMAKEM  480
VCTGAEMCRT IHLLPGRQNS SAELKSIEPQ LQDHFLAYDL VVVLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-111ARF family protein