PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN17431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22847.1 Da PI: 5.8268 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.2 | 1.4e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++ A r+ +Pv+Gavg++++++++++q+++e+ PIN17431.1 2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPGLFQSLLFDAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100 6*********************9999777889****************************************************************999 PP DUF260 95 all 97 +l+ PIN17431.1 101 VLR 103 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PGLFQSLLFD AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PELFGGASEP 120 DEASDCTDMF KLQDPGVSPP QKRRRFPDEP AKVMQLADLD LSLTPGFPTK KSNPSPETRR 180 LGSPSLNSEE SLTTTCGDEP ATEIKLLNLF N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-88 | LBD family protein |