PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN17312.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 406aa MW: 46124.2 Da PI: 8.8345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN17312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	89	107	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ CgksF ++ L H++ PIN17312.1 89 CKECGKSFHSWKALFGHMK 107 ******************7 PP
2	zf-C2H2	12.3	0.00053	282	304	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs+ L H +H PIN17312.1 282 FTCSICKKAFSSYQALGGHRASH 304 89***********9999998887 PP
3	zf-C2H2	13	0.00031	333	355	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H PIN17312.1 333 HECPICFKVFSSGQALGGHKRSH 355 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDKNQHVCKY CNKIFPCGRS LGGHMRSHLI NLSSSGHRKT DEKLPKKKLP PSVNGKSSFK 60 TDFSMENPEK PNKSLKSSEE DTLLQEKLCK ECGKSFHSWK ALFGHMKCHS VSDRRKLIIE 120 SESDYETATP LCKKKRSDRM KRYTVMTTNS SSLNFSPCVS EIDQQEQEEV ALSLIILSRD 180 KGDWGHINSF LNTSNNSSEQ FSTNKIIGAL EMNSKSESLK FKKLKNEKNN LESEVHSPKN 240 LIKESGLNEF EADIKKNKSR KRKFLDMNDY ETCQDFEKKS KFTCSICKKA FSSYQALGGH 300 RASHKKFKGC CAPSSEAENS PNQSPNISEN KDHECPICFK VFSSGQALGG HKRSHLVCDQ 360 SKVNPSVESR DVRNFLDLNL PAPVEEECDD FKPWWKHEPL FGLISS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDKNQHVCKY CNKIFPCGRS LGGHMRSHLI NLSSSGHRKT DEKLPKKKLP PSVNGKSSFK  60
TDFSMENPEK PNKSLKSSEE DTLLQEKLCK ECGKSFHSWK ALFGHMKCHS VSDRRKLIIE  120
SESDYETATP LCKKKRSDRM KRYTVMTTNS SSLNFSPCVS EIDQQEQEEV ALSLIILSRD  180
KGDWGHINSF LNTSNNSSEQ FSTNKIIGAL EMNSKSESLK FKKLKNEKNN LESEVHSPKN  240
LIKESGLNEF EADIKKNKSR KRKFLDMNDY ETCQDFEKKS KFTCSICKKA FSSYQALGGH  300
RASHKKFKGC CAPSSEAENS PNQSPNISEN KDHECPICFK VFSSGQALGG HKRSHLVCDQ  360
SKVNPSVESR DVRNFLDLNL PAPVEEECDD FKPWWKHEPL FGLISS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	136	RRKLIIESESDYETATPLCKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	5e-27	C2H2 family protein