PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16956.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 462aa MW: 51791.1 Da PI: 5.5813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+F++ L H+r H PIN16956.1 64 VCQFCHKVFNSGKALGGHMRIH 85 6*******************99 PP
2	zf-C2H2	14.8	8e-05	318	340	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksFs+ L H ++H PIN16956.1 318 YKCSTCDKSFSTYQALGGHRSSH 340 9***************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MVNNQEADIM SLSIEKGKQK VDEFALWAKL EIPKEEGPEE EEGNMDIGDD QKIGVEINNG 60 TQRVCQFCHK VFNSGKALGG HMRIHVQPAN KKDPVFKARQ TIKSKEQNSR DEKVKKTTCI 120 ICGKDFPSMK SLFGHMRCHP ERDWRGINPP SNTSSSSSSL SEIDDDDKKL PSSRAVDLME 180 SLSGWTVTAR RGRKSLIGTS SSEISSLEDD IELLDAVNDL MMLSRGDPRE SGRQKLGESE 240 GANSFCKDKD VEKADQEMLE DLEQNYFSDD DQMDSKDQGM NDTNTKILVN NNKKKRKKMK 300 LCDLEMDKNG SPVTSDKYKC STCDKSFSTY QALGGHRSSH NKFTIVIRNS IEEYCCINPS 360 NHPIAQVEEN NKICSKNYST TEGLGEGPSS TRQVPLVNDE AKSVLDFDLN ELPPPEDETM 420 CTWCMMVVQK GAVINCRRRI MKGMKDGKSN NPLTSDNQHN TS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MVNNQEADIM SLSIEKGKQK VDEFALWAKL EIPKEEGPEE EEGNMDIGDD QKIGVEINNG  60
TQRVCQFCHK VFNSGKALGG HMRIHVQPAN KKDPVFKARQ TIKSKEQNSR DEKVKKTTCI  120
ICGKDFPSMK SLFGHMRCHP ERDWRGINPP SNTSSSSSSL SEIDDDDKKL PSSRAVDLME  180
SLSGWTVTAR RGRKSLIGTS SSEISSLEDD IELLDAVNDL MMLSRGDPRE SGRQKLGESE  240
GANSFCKDKD VEKADQEMLE DLEQNYFSDD DQMDSKDQGM NDTNTKILVN NNKKKRKKMK  300
LCDLEMDKNG SPVTSDKYKC STCDKSFSTY QALGGHRSSH NKFTIVIRNS IEEYCCINPS  360
NHPIAQVEEN NKICSKNYST TEGLGEGPSS TRQVPLVNDE AKSVLDFDLN ELPPPEDETM  420
CTWCMMVVQK GAVINCRRRI MKGMKDGKSN NPLTSDNQHN TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	299	NKKKRKKM
2	293	319	KKKRKKMKLCDLEMDKNGSPVTSDKYK
3	294	298	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	5e-16	C2H2 family protein