PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN15865.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

RAV

Protein Properties

Length: 341aa MW: 38609.3 Da PI: 7.3421

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN15865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.5	5.8e-12	38	86	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +g W A+I+ + +r++lg+f ++eeAaka++ a+ kl++ PIN15865.1 38 SRFKGVV-NQLNGHWGAQIYA------NhQRIWLGTFKSEEEAAKAYDTAAIKLRN 86 68995.8899**999......44***********************97 PP
2	B3	83.3	2.2e-26	158	250	1	87
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ltpsdv+k++rlv+pk++a + gg+ +++l+++d++ r+W+++++y+k+s+++v+t+GW++F k++gLk++D v+F+ g+ PIN15865.1 158 FEKELTPSDVSKLNRLVIPKRCAVMYfpqfpdqsGGI-VDDMELVFYDQTMRVWKFRYCYWKSSQSFVFTRGWNRFTKEKGLKARDRVIFSA-GE 250 99**************************9997444.5899**********************************************94.33 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MEEASILSGA TTQRSHEVSD SNSSIHQFPV KNPTASSSRF KGVVNQLNGH WGAQIYANHQ 60 RIWLGTFKSE EEAAKAYDTA AIKLRNGEAH RNFPWNHMSV QEPKFQSLFS TEAILCMIRD 120 GSYATKFSDY LMAQIRQGHS HSLTNFNAPS GIKLRHLFEK ELTPSDVSKL NRLVIPKRCA 180 VMYFPQFPDQ SGGIVDDMEL VFYDQTMRVW KFRYCYWKSS QSFVFTRGWN RFTKEKGLKA 240 RDRVIFSAGE CGDGSNEVQK MCMIDVSYYN GTVVEGNGEE VEFPINGHRA ESENAYLLAE 300 LGRHENENED ENGRGEVDIN VGTSSTNAKK KGLKLFGVQI V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	2e-85	RAV family protein