PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN13862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19468.8 Da PI: 8.0323 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.8 | 2.5e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll+++++++r+da++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ PIN13862.1 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEISPNQRDDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELEAANA 108 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MASSSSYNCP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEISP 60 NQRDDAVNSL AYEAEARVRD PVYGCVGAIT FLQRQVERLQ KELEAANADL IRYTCNGIQP 120 SVPMVVPPRQ RAAEFNNSGG RGGGAGGGFY QTPSSYGFPY NYHSSWSDGY NPHGDGNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 2e-70 | LBD family protein |