PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN13490.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family Trihelix
Protein Properties Length: 716aa    MW: 79655 Da    PI: 5.2574
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN13490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.99e-3191175187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r+em+ ++r++  k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  PIN13490.1  91 RWPRQETLALLQIRSEMDAAFRDATVKGPLWEQVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFTQLEA 175
                 8*********************************************************************866665..*******85 PP
2trihelix110.41.1e-34450535187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k evlaLi++r+ me++++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  PIN13490.1 450 RWPKAEVLALIQLRSGMESSYQEAGPKGPLWEEISAGMQRMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 535
                 8*********************************************************************8.99999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    
MQHHHQDGSS GGGGGGAPPP LCGYPNPQGE AAPEVAVMSS EEHQKLGDLG IAEAASPISS  60
RPPAAAAIGS TNFEELMRAS AAEGGSTSGN RWPRQETLAL LQIRSEMDAA FRDATVKGPL  120
WEQVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF TQLEALHHST  180
STSQVAPRIP TSSAAAAAVS LPPPLTPTSQ PEALLPQAYG GIGISFSSNS SSSSSSEEDD  240
DEEQDQEMET ESADHSRRGR KRKRSTHSGG DIDSDERMME FFEGLMKQVM QKQEAMQQKF  300
LEAIEKREQD RMIREEAWKR QDMARIAREH DLMAQERALS ASRDAAIIAF LEKITGQKIH  360
LPTTTTVPIE QQYQRQSESQ NNQQQQQSLQ QQQQQQSHSD QQRPQSMEII EARQVSTTGN  420
EIVPAAIPEQ QMQIQDFTGG GNVEGMTSSR WPKAEVLALI QLRSGMESSY QEAGPKGPLW  480
EEISAGMQRM GYNRSAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF HELDALYRKK  540
ILGNTSGGIN LGMSDQQRQQ QDLGMPSSLQ SLQVNINASE DKDGGKTDQM QTSGVGAYTS  600
TLFGGQSQGD IGEPKQPEDM LKKQFHIQHQ QSSMMINDYC TNNVDDCYNN SDDLDDEEEE  660
EVDENEEYDD HHKSEEEMKM AYKIQCQRQN GTNAAGATPS TTSSFMAMHG SVISPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KRSAKKCKE
2257263RRGRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein