PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN13036.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

GRF

Protein Properties

Length: 576aa MW: 61525 Da PI: 8.0933

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN13036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	207	250	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PIN13036.1 207 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 250 79***************************************998 PP
2	QLQ	61.4	2.4e-21	141	177	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP++Ll+++++ PIN13036.1 141 GPFTPSQWMELEHQALIYKHIVANVPVPSNLLVPLKR 177 59********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MDFGVVSHKQ ASPNAPCLGS TEPRDENGHG SVNLKHQRSG LSEDSWRLPK MPRPGEVDFS 60 SKNATENFTS FGRCNLWPSA VDDGQKMLSF SSSEPHSSAG MAGSGSSRSI AFSICQDEHN 120 GRTGGGGLSG GIRGPFARMK GPFTPSQWME LEHQALIYKH IVANVPVPSN LLVPLKRSLY 180 SYASPGSYAS NFLGWGPFHL GFSGSNDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR 240 GRHRSRKPVE GHTGHAVSGS TTPKVAPIAS SSSASVISSS SPSNSSLSAI QHHLTSLQPN 300 TATATNLVSR SQGFQGLSLI TPTTGLKSKE TPFSVQKQHV SFEESSQSEF GIVSTDSLLN 360 PSERISYMNS TNTDSFLHFD AKESNNQHPV HHFIDDWPKD HHSDRASGSW PEELKSDWTQ 420 LSMSIPVAPD FSSSSSSPAQ EKSTISSLRL SHELNPIHMS LGVSHNLGEP IQKQTSWLPV 480 SWGNSMGGPL GEVLISSTTG AGVGESCSSV KAWKSSPQLG SSPTGVLQKS TFVSLSNSSS 540 GSSPPSTDNK KASENASLCN DLLGSALVSS AAIPSL

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MDFGVVSHKQ ASPNAPCLGS TEPRDENGHG SVNLKHQRSG LSEDSWRLPK MPRPGEVDFS  60
SKNATENFTS FGRCNLWPSA VDDGQKMLSF SSSEPHSSAG MAGSGSSRSI AFSICQDEHN  120
GRTGGGGLSG GIRGPFARMK GPFTPSQWME LEHQALIYKH IVANVPVPSN LLVPLKRSLY  180
SYASPGSYAS NFLGWGPFHL GFSGSNDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR  240
GRHRSRKPVE GHTGHAVSGS TTPKVAPIAS SSSASVISSS SPSNSSLSAI QHHLTSLQPN  300
TATATNLVSR SQGFQGLSLI TPTTGLKSKE TPFSVQKQHV SFEESSQSEF GIVSTDSLLN  360
PSERISYMNS TNTDSFLHFD AKESNNQHPV HHFIDDWPKD HHSDRASGSW PEELKSDWTQ  420
LSMSIPVAPD FSSSSSSPAQ EKSTISSLRL SHELNPIHMS LGVSHNLGEP IQKQTSWLPV  480
SWGNSMGGPL GEVLISSTTG AGVGESCSSV KAWKSSPQLG SSPTGVLQKS TFVSLSNSSS  540
GSSPPSTDNK KASENASLCN DLLGSALVSS AAIPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-102	GRF family protein