PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12360.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 309aa    MW: 34869.4 Da    PI: 6.2594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++  + G g+W+ +ar  g++R++k+c++rw +yl
       PIN12360.1 20 KGLWSPEEDEKLMKYMLKNGQGCWSDVARNAGLHRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding48.42.2e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++ +lG++ W+ Ia  ++ gRt++++k++w++
       PIN12360.1  73 RGAFSPQEEELIIHLHCLLGNR-WSQIATQLP-GRTDNEIKNFWNS 116
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MRKPETSVAK NKGNAPKLKK GLWSPEEDEK LMKYMLKNGQ GCWSDVARNA GLHRCGKSCR  60
LRWINYLRPD LKRGAFSPQE EELIIHLHCL LGNRWSQIAT QLPGRTDNEI KNFWNSTIKK  120
RLKNISSSAT RSPEPIVQQG VGGEGGLIMT MQEQHNMIMG MFSSSSANIL SSSSLSSLSS  180
SMIDPLPAIE YHQQVLYFDA QPSTTQAKST TYNVSDHNID NGLFGEDITT SMEGYLFNIP  240
TLESADNYQE TKSKTEDLVQ IKTNNNINNI FDNIINKKIE NVGEMGEWDV EELLKDVPSF  300
PFLDFQLNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-65MYB family protein