PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11356.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 248aa MW: 26814.6 Da PI: 8.8215

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.3	4.9e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+ lr++C+++C+++p++ p+ q++++ +++k++G++ +++ll+a+ ++ r+++++sl+y A+ r+ +PvyGa g++ +++++l+q++ e+ PIN11356.1 4 SCNGCRALRKGCSDKCTIRPCLdwiksPQPQANATLFLAKFYGRAGLINLLNAAAPHLRPAVFKSLLYDACGRIVNPVYGANGLLCSGNWHLCQAAFEA 102 6***********************************************************************************************999 PP DUF260 95 allke 99 +l+++ PIN11356.1 103 VLAGT 107 88765 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MRVSCNGCRA LRKGCSDKCT IRPCLDWIKS PQPQANATLF LAKFYGRAGL INLLNAAAPH 60 LRPAVFKSLL YDACGRIVNP VYGANGLLCS GNWHLCQAAF EAVLAGTPMA KVGVDDGSAL 120 SLMAHDIRHV SKDENVIQRR LRKVRARDRF KKPATKPKLR AESPDVDSAA RVMWSWCHKG 180 EKFDTGLSSR DSGLSRHVER RSNGTESGEA DSASVETVEA TLAKPDELGG GGSESVELEL 240 TLGLEPVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-66	LBD family protein