PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN10862.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 437aa MW: 48254.1 Da PI: 8.8662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN10862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PIN10862.1 47 YVCEICNQGFQRDQNLQMHRRRH 69 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ PIN10862.1 124 WVCEKCSKGYAVQSDYKAHLKTC 146 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MLSNINPSPS PENGNGSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE ICNQGFQRDQ 60 NLQMHRRRHK VPWKLLKRET PIARKRVFVC PEPSCLHHDP CHALGDLVGI KKHFRRKHSN 120 QKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD ACNMGRLRSE 180 NHPLQQPPAC LSRTASSPSP SSDTNLSVAP WAAAGPRPLP KPLDQPIFSN NAADAGGAAT 240 PNNNSRPPNL ELQLLTKAST TTTAIDISGN SIKLDEDHST QLQLSIGSSD IGDKTEAAVS 300 STSEKRSAAA AAAAAAEEQW RIAVAEKAYA EEARQQAKRQ IELAEQEFAN AKRIRQQAQA 360 EMEKAEALKE HATKQMNSTI LHITCHSCKQ KFQQDNAAFW SSLSFGEASS SRENSMGLNY 420 ISAALREWEA RKSTEQK

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MLSNINPSPS PENGNGSKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE ICNQGFQRDQ  60
NLQMHRRRHK VPWKLLKRET PIARKRVFVC PEPSCLHHDP CHALGDLVGI KKHFRRKHSN  120
QKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD ACNMGRLRSE  180
NHPLQQPPAC LSRTASSPSP SSDTNLSVAP WAAAGPRPLP KPLDQPIFSN NAADAGGAAT  240
PNNNSRPPNL ELQLLTKAST TTTAIDISGN SIKLDEDHST QLQLSIGSSD IGDKTEAAVS  300
STSEKRSAAA AAAAAAEEQW RIAVAEKAYA EEARQQAKRQ IELAEQEFAN AKRIRQQAQA  360
EMEKAEALKE HATKQMNSTI LHITCHSCKQ KFQQDNAAFW SSLSFGEASS SRENSMGLNY  420
ISAALREWEA RKSTEQK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	23	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-134	C2H2 family protein