PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN10801.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

NF-YC

Protein Properties

Length: 279aa MW: 30698.9 Da PI: 5.3043

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN10801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.9	1.1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl ++v + PIN10801.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVSSLHLKHCVHSYNVFDFLKEVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITVQRGAK 60 TVSSLHLKHC VHSYNVFDFL KEVVSKVPDY GNSDAAADTS KRRKVVTNEP NDSDEDSKRG 120 SMQETNHPSS NGRGRGRGRG RGRGRPSRAS EREPPRHEVE SISATPQPSI KQITSPLRPM 180 EDNNSELNES SKENIKVSDV ANPESRNFDL NAGVDEGPNK TASNATTTAP PTSSAGPSDV 240 KGEENPGLSE IDRMAIDPVH LAQLNSRMDE EEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR
3	135	144	RGRGRGRGRG
4	135	145	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-65	NF-YC family protein