PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN10454.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 1145aa MW: 125095 Da PI: 5.5043

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN10454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	416	438	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +Fs k++L rH+++ H PIN10454.1 416 RCNKCNVTFSEKDELLRHQSSvH 438 8******************9988 PP
2	zf-C2H2	11.3	0.0011	460	481	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C+ C+k+Fs + +++ Hi PIN10454.1 460 YECQFCHKTFSERRQYTGHIGA 481 99*****************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 1145 aa Download sequence
MASATTAADG GSLQLDSIPI VDLRLLSQSE LYSLSLCSSS AFDPSRWDDV VIPKIDRSVF 60 NESAGSRKQT YSRLRLAPPC SSSSATPRRR TPHVRPTAAS FAGVNNNNSD PENAENAQIV 120 SLLKQLFVTD INPEELVPVK VDYSQSLPAQ QFSSLPSSAP SNVGHPGQKR KRGRPRKNEH 180 IENKQESAMD VSVVDVDNAY GFSSLNEIFV RENVEDKDRE VLNRDGVAVD LMALGTVEHP 240 YREEIRRRTE GLGTEEELLE FLKGLHGQWG SRRKKKRIVD ASEFGNALPI GWRLSLSVKK 300 KNGHVWLCCR RYISPSGLHF VSCKGVSSYL LSLHGVHLTN PHTSSQYNEI VNDADKLTSA 360 TIAHQPDPAI KDDNSKENAV SHASLLACGP ASGNNEMQAL TNAGDSPEGR LGEILRCNKC 420 NVTFSEKDEL LRHQSSVHRR NRYKRGVRVT DGVIIKDGKY ECQFCHKTFS ERRQYTGHIG 480 AHIRYEGKTA VESPAEFVDP RSACEFSVRD SMTEGSLKSN NVVEICNAAA NNRLNICSPC 540 NKDNENVGDL NEVNGYMRVA GAVEKNPCSV AEVLLPGDGY KNVHEDTHEN GCAAEIIDDG 600 SNLQGRRSGS CSALPPNDAT CGVMNSGLIE NSASVEKPEQ SMASKSSLLH SNNHMEEFES 660 FVNNELNCCT RNELKLDYQN FAVNGSVVDF LGNHGSQDKD LAVSVKQQSD FQYLPCKNTG 720 TIDKTSTSGS VASKHDEDPN GRPPTSHNDK ACVQDDVPDW IGKHRVDDKC SFRTCENDGS 780 KANDDGLSRH EEMQTAIGSV FPSWNEQENV SKKSDTEALN CPLKESAVQN PSNSKLVALS 840 GHESMHGSEN KDDAVCGRKM EKPEFDDFQN FGNGESRDPF SGNDAGLNSS SITGSEKDRK 900 LGVCSPFATT TDKQFLTEDS MIRILNDTLE EQKQQPSGDI LLSRTGVSDF SDKEYTLNKI 960 YSAPANPPKL NEIDNAGRHG LSLSFDNLQT EMCKDTNRVE QERFQADGFN IQSFHKTYGD 1020 QTNLSIRNAN VPSDQKQGRS FGIDFHDSSL NSGTQELGSN FNLAQPGRDW NEPRAQKIDP 1080 SSQNLMAGFG SSSSLSGGGG GVTADGSLRT GNEIVFQGGF DVASAPQISS SSCFSSFGLT 1140 SDKGV

Sequence ? help Back to Top

Protein Sequence Length: 1145 aa Download sequence

MASATTAADG GSLQLDSIPI VDLRLLSQSE LYSLSLCSSS AFDPSRWDDV VIPKIDRSVF  60
NESAGSRKQT YSRLRLAPPC SSSSATPRRR TPHVRPTAAS FAGVNNNNSD PENAENAQIV  120
SLLKQLFVTD INPEELVPVK VDYSQSLPAQ QFSSLPSSAP SNVGHPGQKR KRGRPRKNEH  180
IENKQESAMD VSVVDVDNAY GFSSLNEIFV RENVEDKDRE VLNRDGVAVD LMALGTVEHP  240
YREEIRRRTE GLGTEEELLE FLKGLHGQWG SRRKKKRIVD ASEFGNALPI GWRLSLSVKK  300
KNGHVWLCCR RYISPSGLHF VSCKGVSSYL LSLHGVHLTN PHTSSQYNEI VNDADKLTSA  360
TIAHQPDPAI KDDNSKENAV SHASLLACGP ASGNNEMQAL TNAGDSPEGR LGEILRCNKC  420
NVTFSEKDEL LRHQSSVHRR NRYKRGVRVT DGVIIKDGKY ECQFCHKTFS ERRQYTGHIG  480
AHIRYEGKTA VESPAEFVDP RSACEFSVRD SMTEGSLKSN NVVEICNAAA NNRLNICSPC  540
NKDNENVGDL NEVNGYMRVA GAVEKNPCSV AEVLLPGDGY KNVHEDTHEN GCAAEIIDDG  600
SNLQGRRSGS CSALPPNDAT CGVMNSGLIE NSASVEKPEQ SMASKSSLLH SNNHMEEFES  660
FVNNELNCCT RNELKLDYQN FAVNGSVVDF LGNHGSQDKD LAVSVKQQSD FQYLPCKNTG  720
TIDKTSTSGS VASKHDEDPN GRPPTSHNDK ACVQDDVPDW IGKHRVDDKC SFRTCENDGS  780
KANDDGLSRH EEMQTAIGSV FPSWNEQENV SKKSDTEALN CPLKESAVQN PSNSKLVALS  840
GHESMHGSEN KDDAVCGRKM EKPEFDDFQN FGNGESRDPF SGNDAGLNSS SITGSEKDRK  900
LGVCSPFATT TDKQFLTEDS MIRILNDTLE EQKQQPSGDI LLSRTGVSDF SDKEYTLNKI  960
YSAPANPPKL NEIDNAGRHG LSLSFDNLQT EMCKDTNRVE QERFQADGFN IQSFHKTYGD  1020
QTNLSIRNAN VPSDQKQGRS FGIDFHDSSL NSGTQELGSN FNLAQPGRDW NEPRAQKIDP  1080
SSQNLMAGFG SSSSLSGGGG GVTADGSLRT GNEIVFQGGF DVASAPQISS SSCFSSFGLT  1140
SDKGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	RRKKKR
2	272	301	RRKKKRIVDASEFGNALPIGWRLSLSVKKK
3	273	302	RRKKKRIVDASEFGNALPIGWRLSLSVKKK
4	274	303	RRKKKRIVDASEFGNALPIGWRLSLSVKKK