PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN10447.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family BBR-BPC
Protein Properties Length: 295aa    MW: 32787.5 Da    PI: 8.209
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN10447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind316.11.1e-961029527301
   GAGA_bind  27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlsepqled 121
                   m++ aerda+irern+al e+k a+aerdma lqrd+a+aern+a+ erd+++++l+++e s++      ++ +++  sg+ks++  qq++ ++++ 
  PIN10447.1  10 TFMAITAERDAAIRERNMALEERKRAFAERDMAMLQRDAAVAERNAAMQERDEAIASLQFRESSMNdnttIPDSLESELASGAKSLHYQQQMHMSETAY 108
                 5799999*********************************************************99764333445677888999999888877777777 PP

   GAGA_bind 122 save.lreeeklealpieeaaeea.kekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesader.........skaekksidlvlngvslDes 206
                 s+ + lr  +++ ++  e+a++   ++ k  k++++ k+p++ k+      k+ +++ ++++       +          k+   + +l+ln++++Des
  PIN10447.1 109 SPRGsLRGGDNTITEGSETAKPRRgRQPKDGKATKSVKTPRAGKRAaegLSKEVNSNGWNNE-------QglesddedlDKQVSWKDNLGLNQINFDES 200
                 77664444443333333333333302333334444444444444332222233232222222.......1233344445454444569*********** PP

   GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 ++PvPvC+CtG+++ CY+WGnGGWqSaCCtttiS+yPLP+++++r +R++grKmS++af+klL++LaaeGyd+s p+DLkdhWAkHGtn++ t++
  PIN10447.1 201 AMPVPVCTCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQVANKRYSRVGGRKMSGSAFSKLLNRLAAEGYDFSAPLDLKDHWAKHGTNRYSTLK 295
                 *******************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDHNHLTIKT FMAITAERDA AIRERNMALE ERKRAFAERD MAMLQRDAAV AERNAAMQER  60
DEAIASLQFR ESSMNDNTTI PDSLESELAS GAKSLHYQQQ MHMSETAYSP RGSLRGGDNT  120
ITEGSETAKP RRGRQPKDGK ATKSVKTPRA GKRAAEGLSK EVNSNGWNNE QGLESDDEDL  180
DKQVSWKDNL GLNQINFDES AMPVPVCTCT GSPQPCYRWG NGGWQSACCT TTISMYPLPQ  240
VANKRYSRVG GRKMSGSAFS KLLNRLAAEG YDFSAPLDLK DHWAKHGTNR YSTLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-89BBR-BPC family protein