PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN09956.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 458aa MW: 52758.8 Da PI: 7.4227

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN09956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.4	5.2e-30	92	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plWeevs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea PIN09956.1 92 RWPRQETLTLLEIRSRLDTKFKEANQKGPLWEEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 177 8***********************************999*************************98..55667*****85 PP
2	trihelix	47.6	4.4e-15	340	417	2	76
trihelix 2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W ++e+ Li++r+ me ++ + ++ ++ Wee+++km g ers +Ckekw++l + k+++ +k++++++s PIN09956.1 340 WAQSEISRLIQLRNGMEFKFDQesgSSEEGRVWEEIAAKMGCLGHERSGLKCKEKWDSLIDYIIKCNKKRKENNNQES 417 ******************984444689999**********************************9999755443 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEDQYGNMAD LRPYVGGRAF FPPMSRPPDF ISGHPFDMLM FRPESTVIAP AVNTSGGASS 60 SAVACGGCLS GFEMEGGGVS GTGVGGDGGT GRWPRQETLT LLEIRSRLDT KFKEANQKGP 120 LWEEVSRIMS EEHGYQRTGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG 180 ETNNNNSEPH LVDHYNFPNN NVLLGNNNNN NNTNQESYPG SFDSSDRTIS SDDHTNYDSK 240 KKKRRSNLKA KIKDFIDARM RKMMEKQETW MENMIRTIEQ KEQERILREE QWRKQDALRI 300 ERERNFWANE RAWIEARDAS LMDAFHKLKE LRGSRECDVW AQSEISRLIQ LRNGMEFKFD 360 QESGSSEEGR VWEEIAAKMG CLGHERSGLK CKEKWDSLID YIIKCNKKRK ENNNQESVCD 420 DNQGVGSVTY CETSDQQGII NSDSCLRYFN VGDSYGRY

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEDQYGNMAD LRPYVGGRAF FPPMSRPPDF ISGHPFDMLM FRPESTVIAP AVNTSGGASS  60
SAVACGGCLS GFEMEGGGVS GTGVGGDGGT GRWPRQETLT LLEIRSRLDT KFKEANQKGP  120
LWEEVSRIMS EEHGYQRTGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG  180
ETNNNNSEPH LVDHYNFPNN NVLLGNNNNN NNTNQESYPG SFDSSDRTIS SDDHTNYDSK  240
KKKRRSNLKA KIKDFIDARM RKMMEKQETW MENMIRTIEQ KEQERILREE QWRKQDALRI  300
ERERNFWANE RAWIEARDAS LMDAFHKLKE LRGSRECDVW AQSEISRLIQ LRNGMEFKFD  360
QESGSSEEGR VWEEIAAKMG CLGHERSGLK CKEKWDSLID YIIKCNKKRK ENNNQESVCD  420
DNQGVGSVTY CETSDQQGII NSDSCLRYFN VGDSYGRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	KKKKRR
2	240	266	KKKKRRSNLKAKIKDFIDARMRKMMEK
3	241	246	KKKKRR
4	241	267	KKKKRRSNLKAKIKDFIDARMRKMMEK
5	242	268	KKKKRRSNLKAKIKDFIDARMRKMMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-89	Trihelix family protein