PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN09320.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 683aa MW: 76026.1 Da PI: 6.981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN09320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H PIN09320.1 77 KCEKCSREFCSPVNYRRHVRVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MATAKLCSSG TFNSIKSEEG TDSVDTFFKQ TTGKEPLLPF SRTVDSPVQW IQLLHALDQP 60 DLPGWPLLTP LKVQMQKCEK CSREFCSPVN YRRHVRVHRR SLNVDKESHK NRDLLAAFWD 120 KQSLEQAKEI LSFDDVMLKE IPGSSVINSL GSSLRKPGVW TLPQIYVKAG SALLDIIQAK 180 PSRLPISSQE LFSILDDASE RTFLCAGSAE SLRKYVFDGE TAKNSFELKN LVATVSFLVE 240 QKLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQAVLLERK KQKKLRQKEQ KLKEQFYGGN 300 ANLTINVDAA DETTSAEASE PSPPSDSNSY SPDMPTNLDF CLESTEPQRE EPDEDTKAQF 360 DSSREHINRG DSHAIEPQMV NDNGHRHVAS NRWQVSKLQS RSSRYASSNL QISKHEPIHK 420 PGPSRDRTLL NGSKVWTKKL KNDSVADGLR PFSSQRETSN QTEENKCEVI IGSIPLTLRS 480 CVAQQRDSPP DEAREICSTE PPPLKDKYVS EKVSNANTVD SGTTQVTSKL WRPVSNGEAR 540 SIPAVGRSNA DSEGGATLDK VHDQNLPIER SGESQSTDGD DFDNRKSQQG WLPFNSSAAR 600 EFLAQRWKGA ISGEHVTLVL SASPESPDVQ PDSSKVYDPS DPNEGVLPPN AENQLHRSGP 660 TKFIKKGDKS LKVKYIPKQK PIA

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MATAKLCSSG TFNSIKSEEG TDSVDTFFKQ TTGKEPLLPF SRTVDSPVQW IQLLHALDQP  60
DLPGWPLLTP LKVQMQKCEK CSREFCSPVN YRRHVRVHRR SLNVDKESHK NRDLLAAFWD  120
KQSLEQAKEI LSFDDVMLKE IPGSSVINSL GSSLRKPGVW TLPQIYVKAG SALLDIIQAK  180
PSRLPISSQE LFSILDDASE RTFLCAGSAE SLRKYVFDGE TAKNSFELKN LVATVSFLVE  240
QKLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQAVLLERK KQKKLRQKEQ KLKEQFYGGN  300
ANLTINVDAA DETTSAEASE PSPPSDSNSY SPDMPTNLDF CLESTEPQRE EPDEDTKAQF  360
DSSREHINRG DSHAIEPQMV NDNGHRHVAS NRWQVSKLQS RSSRYASSNL QISKHEPIHK  420
PGPSRDRTLL NGSKVWTKKL KNDSVADGLR PFSSQRETSN QTEENKCEVI IGSIPLTLRS  480
CVAQQRDSPP DEAREICSTE PPPLKDKYVS EKVSNANTVD SGTTQVTSKL WRPVSNGEAR  540
SIPAVGRSNA DSEGGATLDK VHDQNLPIER SGESQSTDGD DFDNRKSQQG WLPFNSSAAR  600
EFLAQRWKGA ISGEHVTLVL SASPESPDVQ PDSSKVYDPS DPNEGVLPPN AENQLHRSGP  660
TKFIKKGDKS LKVKYIPKQK PIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	ERKKQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-100	C2H2 family protein