PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN08992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | ARF | ||||||||
Protein Properties | Length: 895aa MW: 98906.8 Da PI: 6.7307 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.5e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l PIN08992.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNEKNQL 222 99*****************************8544444..48************************************************..8899999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PIN08992.1 223 LLGIRRA 229 ****997 PP | |||||||
2 | Auxin_resp | 120.7 | 1.1e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k PIN08992.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence |
MKLSSTGLNH QSPEGDKNCL NSELWHACAG PLVSLPSIGS HVVYFPQGHS EQVAVSTNKE 60 VDTQIPNYPN LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEHKEV SFLPADLGAP 120 SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHNNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYIKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSPF PLRLKRPWPS GLPSFTGMKT DDMGLNSPLL WLRGDFGDRG MQSFNQGMVA 420 TPWMQPRLDP SVLGLQNDIY QAMAAAAIHD MRAVDPPKQV LPSMMQFQQP QAVGTRPSGL 480 VQPQMLQQAQ SSAPFLQIPT TPQSHANVLP QQLLHQNSFN NVQIQQQNQY HQPSAQMQHV 540 IDPQKVSTVA PVVSQLSLSS QAPSQTMQSI SSVHQSFSES NVKPIISNIS SPLHSLLGSV 600 TQDDTSSLFI VPRSGSLPSS NGWPTKRVAL DPLFSGSISQ SISPLIEQLG PPNTNVTHNP 660 VSLPPFPGRE CLIEQEGSND PQNHFLFGVN IDSSSLLMQN LKGVSSDSDN ATIPFASSNY 720 MSSSSADYSL NPTVTSSGRM DESGFLLSSD NVGHANPPNR TFVKVHKSGS FGRSLDITKF 780 SSYNELRSEL AQMFGLEGQL EDPLRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWCIKIL 840 SPQEVHEMGK QGMELLNSVP LQRLPLANGS CDGYGNRQEA RNMSAGIPSV GTLDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | ARF family protein |