PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN08984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 25376.3 Da PI: 9.1752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108.3 | 6.1e-34 | 10 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa Ck++r+kC+++C+lap fpae++++f++vhk+FG+snv+k++k+l+ee+r +a++slv+eA r+r+Pv G +g ++++ ++l+ k++ ++ + PIN08984.1 10 ACATCKHQRKKCTEKCILAPFFPAEKTQEFQAVHKVFGVSNVTKIIKNLKEEDRARAIDSLVWEALSRQREPVLGPYGEYRRVFEELRFYKTQFQQFQ 107 7***********************************************************************************99999999887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MHRTTNNTSA CATCKHQRKK CTEKCILAPF FPAEKTQEFQ AVHKVFGVSN VTKIIKNLKE 60 EDRARAIDSL VWEALSRQRE PVLGPYGEYR RVFEELRFYK TQFQQFQQIQ NQGRIMGWNN 120 NNGMTMNRGG MINNNNSNNN ENNTLNNIHG NGNFFPYSYS SHHIQEDEKI RAERDNASAI 180 IIPQQHLANG FNQQFFIAGQ YNRMETKSME STLWEGSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-46 | LBD family protein |