PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN08939.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 389aa MW: 42594.3 Da PI: 9.051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN08939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	163	185	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L+ H + H PIN08939.1 163 ACPECGEVFPKIESLELHRAVtH 185 6*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MALLTSVPDP KKQTPNSNSQ KKHQKTKQSS SWDQIKNLLT CKQIEDSKVH DPSKNHSLIY 60 SSCSSICTFR DVVHGNTRVV HRADYSPEET SSVGQETRLL SKRSSRGSSS SSRTVNSSSV 120 RSSAGGAAYT GRGIQLRKLS GCYECHAIVD PSRYPLPRTT ICACPECGEV FPKIESLELH 180 RAVTHAVSEL GPEDSSRNIV EIIFKSSWLK KDNPICKIER ILKVHNTQRT IQRFEDYRDS 240 VKIHAKRNAR CAADGNELLR FHSATLTCSL GARGSTSLCG SIPACGVCTI IRHGFQSNKI 300 SGIRTTASSG RAHDCLSGSG MRRAMLVCRV IAGKVKHVAE DATADEECGG SYDSLASFAG 360 VYSNLEELYV FSSRAILPCF VVIYKVLES

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MALLTSVPDP KKQTPNSNSQ KKHQKTKQSS SWDQIKNLLT CKQIEDSKVH DPSKNHSLIY  60
SSCSSICTFR DVVHGNTRVV HRADYSPEET SSVGQETRLL SKRSSRGSSS SSRTVNSSSV  120
RSSAGGAAYT GRGIQLRKLS GCYECHAIVD PSRYPLPRTT ICACPECGEV FPKIESLELH  180
RAVTHAVSEL GPEDSSRNIV EIIFKSSWLK KDNPICKIER ILKVHNTQRT IQRFEDYRDS  240
VKIHAKRNAR CAADGNELLR FHSATLTCSL GARGSTSLCG SIPACGVCTI IRHGFQSNKI  300
SGIRTTASSG RAHDCLSGSG MRRAMLVCRV IAGKVKHVAE DATADEECGG SYDSLASFAG  360
VYSNLEELYV FSSRAILPCF VVIYKVLES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-156	C2H2 family protein