PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN08569.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SBP

Protein Properties

Length: 1068aa MW: 117600 Da PI: 8.1177

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN08569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130	8.8e-41	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ PIN08569.1 145 VCQVDNCKEDLSAAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence
MEDVGAQVVA PIVIHQTLAR RFCDSYPMAK KRGLPFHSSS FVHPNTSNNW NSRSWDWDSA 60 RFVAKPLQCD GVQVRSGAPR MELQSGAPNL RKPDRSGEDE NLLLKLGGGD GNGNNGTNLV 120 EPQPVSRPNK RVRSGSPGGS TNYPVCQVDN CKEDLSAAKD YHRRHKVCEV HSKAGKALVG 180 KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDSTPRML APGSHDNNVS 240 DSDIVNLLAV LTRAQGNTKD RSGNLSTIPD KDQLLQILSK INSLPLPANL VAKLNGSIPN 300 LVPSENQNQK NGTASSPSTM DLLAVLSATP GAPSSDAVEF QSQPSTEESE SEKSKSLCVD 360 QVSCLKLHRG PMMGFPTAGG ERSGASYQSP MEEVDCRLQE TSPSLHLQLF SSSPEDNSSR 420 KLPPGGNYLS SNSSNPPEER SPVSSPPLVQ DLFPMQTSRQ TMKADRLSNG EREIACVKAT 480 TSNGCSTSLQ LFGRSIQATE KGSIQSSSYQ AGYASSTMSD HSPSSLNSDA QDRTGRIVFK 540 LFDKDPSHLP GSLRTQIYNW LSNSPSEMEG YIRPGCIVLS LYLSMPSFVW DQLEENLLNY 600 VKSLIRDIDV NFWSNGRFLV YTDRQMASHK EGKIRLCKSC RSWNTPELIS VSPLAIVGGQ 660 ETSLVLRGRG LTAPGTKIHC THAVGYNIRE VPLSSFQETA HDEISLGSFK VNEASGILGR 720 CLVEVENNFR GTSFPVIIAD DNICQELRVL EHEINGSAEI CNGVPADHIQ NTGRLRSREE 780 VLHFLDELGW LFQRKHKSFL FGIPDYRLSR FKFLLTFAIE HDFCALVKTL LDILLELNLG 840 RKGLVTESLE MLSEIHLLNR AVKRRCRRMV NLLIHYSIID STDIFDNFIF VPNMAGPGGI 900 TPLHLAASTS SSDDIVDALT SDPQEIGLHG WNSVLDANGL SPYAYALMRN HHSYNALVAR 960 KLADRTNGQV SVSIENEIEQ FQAGMDKDKK TTSHSNQGQK SCSRCAVVAA RGFSKRFPGS 1020 KGLLQRPYIH SMLVIAAVCV CVCVLLRGHP HVGCVSPFAW ENLGYGAA

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence

MEDVGAQVVA PIVIHQTLAR RFCDSYPMAK KRGLPFHSSS FVHPNTSNNW NSRSWDWDSA  60
RFVAKPLQCD GVQVRSGAPR MELQSGAPNL RKPDRSGEDE NLLLKLGGGD GNGNNGTNLV  120
EPQPVSRPNK RVRSGSPGGS TNYPVCQVDN CKEDLSAAKD YHRRHKVCEV HSKAGKALVG  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDSTPRML APGSHDNNVS  240
DSDIVNLLAV LTRAQGNTKD RSGNLSTIPD KDQLLQILSK INSLPLPANL VAKLNGSIPN  300
LVPSENQNQK NGTASSPSTM DLLAVLSATP GAPSSDAVEF QSQPSTEESE SEKSKSLCVD  360
QVSCLKLHRG PMMGFPTAGG ERSGASYQSP MEEVDCRLQE TSPSLHLQLF SSSPEDNSSR  420
KLPPGGNYLS SNSSNPPEER SPVSSPPLVQ DLFPMQTSRQ TMKADRLSNG EREIACVKAT  480
TSNGCSTSLQ LFGRSIQATE KGSIQSSSYQ AGYASSTMSD HSPSSLNSDA QDRTGRIVFK  540
LFDKDPSHLP GSLRTQIYNW LSNSPSEMEG YIRPGCIVLS LYLSMPSFVW DQLEENLLNY  600
VKSLIRDIDV NFWSNGRFLV YTDRQMASHK EGKIRLCKSC RSWNTPELIS VSPLAIVGGQ  660
ETSLVLRGRG LTAPGTKIHC THAVGYNIRE VPLSSFQETA HDEISLGSFK VNEASGILGR  720
CLVEVENNFR GTSFPVIIAD DNICQELRVL EHEINGSAEI CNGVPADHIQ NTGRLRSREE  780
VLHFLDELGW LFQRKHKSFL FGIPDYRLSR FKFLLTFAIE HDFCALVKTL LDILLELNLG  840
RKGLVTESLE MLSEIHLLNR AVKRRCRRMV NLLIHYSIID STDIFDNFIF VPNMAGPGGI  900
TPLHLAASTS SSDDIVDALT SDPQEIGLHG WNSVLDANGL SPYAYALMRN HHSYNALVAR  960
KLADRTNGQV SVSIENEIEQ FQAGMDKDKK TTSHSNQGQK SCSRCAVVAA RGFSKRFPGS  1020
KGLLQRPYIH SMLVIAAVCV CVCVLLRGHP HVGCVSPFAW ENLGYGAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	860	865	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein