PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN06827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20463.3 Da PI: 8.9106 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.8 | 1.6e-37 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+Ca++C lapyfpa+++k+f nvhk FG+ nv+k+lk++++++r++ m+s+++eA++ra dPv G++++i++l+++++ +el+++ + PIN06827.1 38 ACAACKHQRRRCAPNCLLAPYFPANKQKEFLNVHKHFGVGNVVKTLKNVDPNNRRNSMASVIFEANMRAIDPVGGCCRFIRDLEKRIQFYTSELDSVLK 136 7*******************************************************************************************9998766 PP DUF260 100 e 100 + PIN06827.1 137 Q 137 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MNTTNNIQNT TIKPQASKSD GPSPPWPVSG GGGAGAQACA ACKHQRRRCA PNCLLAPYFP 60 ANKQKEFLNV HKHFGVGNVV KTLKNVDPNN RRNSMASVIF EANMRAIDPV GGCCRFIRDL 120 EKRIQFYTSE LDSVLKQIAF HRWLNGKRVN SDVCDQDLVN VEVPEEQFLN GKVAENIKPD 180 VEKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-31 | LBD family protein |