PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN06660.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SBP

Protein Properties

Length: 787aa MW: 88129.7 Da PI: 6.827

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN06660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.1	9.4e-37	137	214	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCead+se+k yh+rh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ PIN06660.1 137 RCQVPGCEADISELKGYHKRHRVCLHCANASAVMLDGESKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKHN 214 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence
MQPNPPPLIP ASASQPRIPE LLSAGPQIPS DDPTSSAHFD WSDFLDFNLD ENLSISFPQT 60 EPEQPGIDQS HDPESSGGDK PGRVRKRDPR LVCSNFLAGR VPCACPELDE KLEEEEASFP 120 GKKRSRMVRV PGGAPARCQV PGCEADISEL KGYHKRHRVC LHCANASAVM LDGESKRYCQ 180 QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKHNDSKEGV EKESQQSILA DDVSGDDDTG 240 KDGICVSSQI EEREIILESD THVSALCSAL GSHNLQSDSG ASIAPSGETH IDANEQNLKY 300 NYSPSYCDNK STFTSVCPAG RISFKLYDWN PAEFPRRLRL QIFQWLASMP IELEGYIRPG 360 CTILTAFIAM PKPVWLKLLK EPALCIKELV ASPGSMLSGR GTMHVYLNDM IFRVTKDAAS 420 VVKIRVKDQA PKLHYIYPTC FEAGRPMEFL ACGSYLLQSN FRFLVSFAGR YLAYNICVSS 480 TCEKEDANTD HQLLKIYVPQ IDVDLFGPAF IEVENQSGLS NFIPILVGDG ETCAEMEILQ 540 QKFETPLSSR EQKPSRPQPT CEDFALRQAR FSEFVLDVAW LLKKPVSEQQ LTSSHIQRFN 600 CLLNFLIEKE SYVVLERLFC SLKYLMDKNL LPGTSDPDMK LLWKNMDFAQ SRLAQKLLGK 660 DFSVMPAPDG KSNRHSSQND ALSVLPAAKQ GVQTVKNMLS LTLPSLSPDK DATVPLLKRD 720 VIMNVNLQER PRISPSRLVT RTFWTSRPLI MAISAIGVCF GLCVVVLHPQ RIGEIATTLQ 780 RCLFDDY

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence

MQPNPPPLIP ASASQPRIPE LLSAGPQIPS DDPTSSAHFD WSDFLDFNLD ENLSISFPQT  60
EPEQPGIDQS HDPESSGGDK PGRVRKRDPR LVCSNFLAGR VPCACPELDE KLEEEEASFP  120
GKKRSRMVRV PGGAPARCQV PGCEADISEL KGYHKRHRVC LHCANASAVM LDGESKRYCQ  180
QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKHNDSKEGV EKESQQSILA DDVSGDDDTG  240
KDGICVSSQI EEREIILESD THVSALCSAL GSHNLQSDSG ASIAPSGETH IDANEQNLKY  300
NYSPSYCDNK STFTSVCPAG RISFKLYDWN PAEFPRRLRL QIFQWLASMP IELEGYIRPG  360
CTILTAFIAM PKPVWLKLLK EPALCIKELV ASPGSMLSGR GTMHVYLNDM IFRVTKDAAS  420
VVKIRVKDQA PKLHYIYPTC FEAGRPMEFL ACGSYLLQSN FRFLVSFAGR YLAYNICVSS  480
TCEKEDANTD HQLLKIYVPQ IDVDLFGPAF IEVENQSGLS NFIPILVGDG ETCAEMEILQ  540
QKFETPLSSR EQKPSRPQPT CEDFALRQAR FSEFVLDVAW LLKKPVSEQQ LTSSHIQRFN  600
CLLNFLIEKE SYVVLERLFC SLKYLMDKNL LPGTSDPDMK LLWKNMDFAQ SRLAQKLLGK  660
DFSVMPAPDG KSNRHSSQND ALSVLPAAKQ GVQTVKNMLS LTLPSLSPDK DATVPLLKRD  720
VIMNVNLQER PRISPSRLVT RTFWTSRPLI MAISAIGVCF GLCVVVLHPQ RIGEIATTLQ  780
RCLFDDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	211	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein