PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN06415.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 306aa    MW: 34495.6 Da    PI: 8.807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN06415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-1674119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G  +W++Ia+++  gR++k+c++rw++ 
       PIN06415.1  74 RGHWRPHEDAKLKELVAQFGAQNWNLIAEKLE-GRSGKSCRLRWFNQ 119
                      899*****************************.***********996 PP
2Myb_DNA-binding58.12.1e-18126169146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eEde+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ 
       PIN06415.1 126 RRAFTEEEDERLLAAHSMYGNK-WAMIARLFP-GRTDNAVKNHWHV 169
                      678*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MNLQQNLMNI TDTKKVPNRI QDKTFIGHSQ LGLEFMEQGN LKKPWFLQED ESVDKWKNEG  60
FGLKTGAKTK LCARGHWRPH EDAKLKELVA QFGAQNWNLI AEKLEGRSGK SCRLRWFNQL  120
DPRINRRAFT EEEDERLLAA HSMYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQNS  180
VYRRRKPCSS QFPCHFQITN GSKTESTMSS NVDESAASTC TDLSLTPSSL KSPHFLSRLH  240
NLNSDSGGEE AKANAGHGDN HSGNSDSNSE VSASESVANN RANVYICGEN EKGNMGFIDF  300
LGMGAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.18e-72MYB family protein