PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN06042.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 725aa MW: 79628.9 Da PI: 8.01

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN06042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.2	1.7e-24	149	250	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++el+ PIN06042.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGDGELR 244 99**************************963.3445679*********************************************3..378999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PIN06042.1 245 LGIRRA 250 **9986 PP
2	Auxin_resp	109.1	4.7e-36	275	356	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++s+Fe++YnPra +s+ +v+++k++k+l++++s GmRfk++feted serr+sG+++gvsd+dp rWp+SkW++L PIN06042.1 275 VVKAISMRSTFEICYNPRARSSDIIVPYHKFSKSLTQSLSCGMRFKIRFETEDPSERRCSGLIIGVSDVDPARWPGSKWKCL 356 6799*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MMCGLIDLNT VENDDETASL SGSPSSSAAS GNLELPATSS SAVCMELWHA CAGPLISLPK 60 RGSAVVYLPQ GHVEHLPEHS AVAYDLPPHV FCRVIDVKLH ADAGSDEVYA QVSLVPDQQI 120 EQKWRDGIIE AEDEDDPEGV GKSITPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY 180 KQQRPSQELV AKDLHGIEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGD 240 GELRLGIRRA AQVKSGATVL PINCQQFNAS SIAAVVKAIS MRSTFEICYN PRARSSDIIV 300 PYHKFSKSLT QSLSCGMRFK IRFETEDPSE RRCSGLIIGV SDVDPARWPG SKWKCLLVRW 360 DDMEINRLNR VSPWEIEPAG LMAGPNSFVL PGTKRNRVGF PAAKPDHPVP ARDGNKVSDF 420 GELSRFQKVL QGQEVFGFSA PYAGVEASRQ HPSDMRCYSG IGGSRICGGG NNFQHFHADA 480 RNSLERTLSG ESFQFHKVLQ GQESMSILSF GRGPETSQVQ DKNATTVING VQVPPRHGNR 540 WSPLTPVYST RRSPSSMLVL PQSSSSPSQF TSFHHGNQNK VQTSNQDSFC VSQRIPRKFA 600 SPESFTREDL HGLGSTGGSE KHSPMALSHL PVPAQPVFRD NQKFVSMCKS SCRLFGFPLT 660 EGKVTTDNPE NPNTSASAYG HEGKSLPCNE DQLYQPPLMT KVMASSCTKP SDMHAVRDRL 720 LDIAL

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MMCGLIDLNT VENDDETASL SGSPSSSAAS GNLELPATSS SAVCMELWHA CAGPLISLPK  60
RGSAVVYLPQ GHVEHLPEHS AVAYDLPPHV FCRVIDVKLH ADAGSDEVYA QVSLVPDQQI  120
EQKWRDGIIE AEDEDDPEGV GKSITPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY  180
KQQRPSQELV AKDLHGIEWK FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGGD  240
GELRLGIRRA AQVKSGATVL PINCQQFNAS SIAAVVKAIS MRSTFEICYN PRARSSDIIV  300
PYHKFSKSLT QSLSCGMRFK IRFETEDPSE RRCSGLIIGV SDVDPARWPG SKWKCLLVRW  360
DDMEINRLNR VSPWEIEPAG LMAGPNSFVL PGTKRNRVGF PAAKPDHPVP ARDGNKVSDF  420
GELSRFQKVL QGQEVFGFSA PYAGVEASRQ HPSDMRCYSG IGGSRICGGG NNFQHFHADA  480
RNSLERTLSG ESFQFHKVLQ GQESMSILSF GRGPETSQVQ DKNATTVING VQVPPRHGNR  540
WSPLTPVYST RRSPSSMLVL PQSSSSPSQF TSFHHGNQNK VQTSNQDSFC VSQRIPRKFA  600
SPESFTREDL HGLGSTGGSE KHSPMALSHL PVPAQPVFRD NQKFVSMCKS SCRLFGFPLT  660
EGKVTTDNPE NPNTSASAYG HEGKSLPCNE DQLYQPPLMT KVMASSCTKP SDMHAVRDRL  720
LDIAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein